Role of mRNA structure in the control of protein folding von Faure, Guilhem, Ogurtsov, Aleksey Y, Shabalina, Svetlana A, Koonin, Eugene V

Volltext

Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing von Kim, Jung-Hyun, Dilthey, Alexander T, Nagaraja, Ramaiah, Lee, Hee-Sheung, Koren, Sergey, Dudekula, Dawood, Wood III, William H, Piao, Yulan, Ogurtsov, Aleksey Y, Utani, Koichi, Noskov, Vladimir N, Shabalina, Svetlana A, Schlessinger, David, Phillippy, Adam M, Larionov, Vladimir

Volltext

The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning von Kim, Jung-Hyun, Noskov, Vladimir N., Ogurtsov, Aleksey Y., Nagaraja, Ramaiah, Petrov, Nikolai, Liskovykh, Mikhail, Walenz, Brian P., Lee, Hee-Sheung, Kouprina, Natalay, Phillippy, Adam M., Shabalina, Svetlana A., Schlessinger, David, Larionov, Vladimir

Volltext

Distinct patterns of expression and evolution of intronless and intron-containing mammalian genes von Shabalina, Svetlana A, Ogurtsov, Aleksey Y, Spiridonov, Alexey N, Novichkov, Pavel S, Spiridonov, Nikolay A, Koonin, Eugene V

Volltext

Sequence characteristics define trade-offs between on-target and genome-wide off-target hybridization of oligoprobes von Matveeva, Olga V, Ogurtsov, Aleksey Y, Nazipova, Nafisa N, Shabalina, Svetlana A

Volltext

Computational models with thermodynamic and composition features improve siRNA design von Shabalina, Svetlana A, Spiridonov, Alexey N, Ogurtsov, Aleksey Y

Volltext

Optimization of duplex stability and terminal asymmetry for shRNA design von Matveeva, Olga V, Kang, Yibin, Spiridonov, Alexey N, Saetrom, Pål, Nemtsov, Vladimir A, Ogurtsov, Aleksey Y, Nechipurenko, Yury D, Shabalina, Svetlana A

Volltext

RAId_aPS: MS/MS analysis with multiple scoring functions and spectrum-specific statistics von Alves, Gelio, Ogurtsov, Aleksey Y, Yu, Yi-Kuo

Volltext

Systematic Assessment of Deep Learning-Based Predictors of Fragmentation Intensity Profiles von Hamaneh, Mehdi B., Ogurtsov, Aleksey Y., Obolensky, Oleg I., Yu, Yi-Kuo

Volltext

Uncertainty-aware and interpretable evaluation of Cas9–gRNA and Cas12a–gRNA specificity for fully matched and partially mismatched targets with Deep Kernel Learning von Kirillov, Bogdan, Savitskaya, Ekaterina, Panov, Maxim, Ogurtsov, Aleksey Y, Shabalina, Svetlana A, Koonin, Eugene V, Severinov, Konstantin V

Volltext

RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integration von Alves, Gelio, Ogurtsov, Aleksey Y, Yu, Yi-Kuo

Volltext

Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites von Kondrashov, Fyodor A., Ogurtsov, Aleksey Y., Kondrashov, Alexey S.

Volltext

Adaptation of mRNA structure to control protein folding von Faure, Guilhem, Ogurtsov, Aleksey Y., Shabalina, Svetlana A., Koonin, Eugene V.

Volltext

RAId: Knowledge‐Integrated Proteomics Web Service with Accurate Statistical Significance Assignment von Ogurtsov, Aleksey Y., Alves, Gelio, Yu, Yi‐Kuo

Volltext

Rapid Classification and Identification of Multiple Microorganisms with Accurate Statistical Significance via High-Resolution Tandem Mass Spectrometry von Alves, Gelio, Wang, Guanghui, Ogurtsov, Aleksey Y., Drake, Steven K., Gucek, Marjan, Sacks, David B., Yu, Yi-Kuo

Volltext

Analysis of internal loops within the RNA secondary structure in almost quadratic time von Ogurtsov, Aleksey Y., Shabalina, Svetlana A., Kondrashov, Alexey S., Roytberg, Mikhail A.

Volltext

Expression patterns of protein kinases correlate with gene architecture and evolutionary rates von Ogurtsov, Aleksey Y, Mariño-Ramírez, Leonardo, Johnson, Gibbes R, Landsman, David, Shabalina, Svetlana A, Spiridonov, Nikolay A

Volltext

Evolution at protein ends: major contribution of alternative transcription initiation and termination to the transcriptome and proteome diversity in mammals von Shabalina, Svetlana A, Ogurtsov, Aleksey Y, Spiridonov, Nikolay A, Koonin, Eugene V

Volltext

Optimized models for design of efficient miR30-based shRNAs von Matveeva, Olga V, Nazipova, Nafisa N, Ogurtsov, Aleksey Y, Shabalina, Svetlana A

Volltext

A periodic pattern of mRNA secondary structure created by the genetic code von Shabalina, Svetlana A., Ogurtsov, Aleksey Y., Spiridonov, Nikolay A.

Volltext