Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics von Lai, Zijuan, Tsugawa, Hiroshi, Wohlgemuth, Gert, Mehta, Sajjan, Mueller, Matthew, Zheng, Yuxuan, Ogiwara, Atsushi, Meissen, John, Showalter, Megan, Takeuchi, Kohei, Kind, Tobias, Beal, Peter, Arita, Masanori, Fiehn, Oliver

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MRMPROBS suite for metabolomics using large-scale MRM assays von Tsugawa, Hiroshi, Kanazawa, Mitsuhiro, Ogiwara, Atsushi, Arita, Masanori

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MRM-DIFF: data processing strategy for differential analysis in large scale MRM-based lipidomics studies von Tsugawa, Hiroshi, Ohta, Erika, Izumi, Yoshihiro, Ogiwara, Atsushi, Yukihira, Daichi, Bamba, Takeshi, Fukusaki, Eiichiro, Arita, Masanori

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Identification by Differential Tissue Proteome Analysis of Talin-1 as a Novel Molecular Marker of Progression of Hepatocellular Carcinoma von Kanamori, Hideaki, Kawakami, Takao, Effendi, Kathryn, Yamazaki, Ken, Mori, Taisuke, Ebinuma, Hirotoshi, Masugi, Yohei, Du, Wenlin, Nagasaka, Keiko, Ogiwara, Atsushi, Kyono, Yutaka, Tanabe, Minoru, Saito, Hidetsugu, Hibi, Toshifumi, Sakamoto, Michiie

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A computational drug metabolite detection using the stable isotopic mass-shift filtering with high resolution mass spectrometry in pioglitazone and flurbiprofen von Uchida, Masashi, Kanazawa, Mitsuhiro, Ogiwara, Atsushi, Sezaki, Hiroshi, Ando, Akihiro, Miyamoto, Yohei

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Proteomic biomarkers for acute interstitial lung disease in gefitinib-treated Japanese lung cancer patients von Nyberg, Fredrik, Ogiwara, Atsushi, Harbron, Chris G, Kawakami, Takao, Nagasaka, Keiko, Takami, Sachiko, Wada, Kazuya, Tu, Hsiao-Kun, Otsuji, Makiko, Kyono, Yutaka, Dobashi, Tae, Komatsu, Yasuhiko, Kihara, Makoto, Akimoto, Shingo, Peers, Ian S, South, Marie C, Higenbottam, Tim, Fukuoka, Masahiro, Nakata, Koichiro, Ohe, Yuichiro, Kudoh, Shoji, Clausen, Ib Groth, Nishimura, Toshihide, Marko-Varga, György, Kato, Harubumi

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MRMPROBS: A Data Assessment and Metabolite Identification Tool for Large-Scale Multiple Reaction Monitoring Based Widely Targeted Metabolomics von Tsugawa, Hiroshi, Arita, Masanori, Kanazawa, Mitsuhiro, Ogiwara, Atsushi, Bamba, Takeshi, Fukusaki, Eiichiro

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Identifying epimetabolites by integrating metabolome databases with mass spectrometry cheminformatics von Lai, Zijuan, Tsugawa, Hiroshi, Wohlgemuth, Gert, Mehta, Sajjan, Mueller, Matthew, Zheng, Yuxuan, Ogiwara, Atsushi, Meissen, John, Showalter, Megan, Takeuchi, Kohei, Kind, Tobias, Beal, Peter, Arita, Masanori, Fiehn, Oliver

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Disease proteomics toward bedside reality von Nishimura, Toshihide, Ogiwara, Atsushi, Fujii, Kiyonaga, Kawakami, Takao, Kawamura, Takeshi, Anyouji, Hisae, Kato, Harubumi

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Synuclein-γ Is Closely Involved in Perineural Invasion and Distant Metastasis in Mouse Models and Is a Novel Prognostic Factor in Pancreatic Cancer von HIBI, Taizo, MORI, Taisuke, KOSUGE, Tomoo, KITAJIMA, Masaki, KITAGAWA, Yuko, SAKAMOTO, Michiie, FUKUMA, Mariko, YAMAZAKI, Ken, HASHIGUCHI, Akinori, YAMADA, Taketo, TANABE, Minoru, AIURA, Koichi, KAWAKAMI, Takao, OGIWARA, Atsushi

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Prediction of Secondary Metabolism Pathways from Genomic Information and Compounds Data von Ogiwara, Atsushi

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Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis von Miwa, Y, Nakata, A, Ogiwara, A, Yamamoto, M, Fujita, Y

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Systematic Classification of B. subtilis Genes and Construction of a Knowledge Base to Represent Functional Information von Ogiwara, Atsushi

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Construction and analysis of a profile library characterizing groups of structurally known proteins von Ogiwara, Atsushi, Uchiyama, Ikuo, Takagi, Toshihisa, Kanehisa, Minoru

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Nested Case Control Study of Proteomic Biomarkers for Interstitial Lung Disease in Japanese Patients With Non–Small-Cell Lung Cancer Treated With Erlotinib: A Multicenter Phase IV... von Atagi, Shinji, Katakami, Nobuyuki, Yoshioka, Hiroshige, Fukuoka, Masahiro, Kudoh, Shoji, Ogiwara, Atsushi, Imai, Masato, Ueda, Masamichi, Matsui, Shigeyuki

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i-RUBY: A novel software for quantitative analysis of highly accurate shotgun-proteomics liquid chromatography/tandem mass spectrometry data obtained without stable-isotope labelin... von Wada, Kazuya, Ogiwara, Atsushi, Nagasaka, Keiko, Tanaka, Naoki, Komatsu, Yasuhiko

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De novo peptide sequencing using ion peak intensity and amino acid cleavage intensity ratio von Kanazawa, Mitsuhiro, Anyoji, Hisae, Ogiwara, Atsushi, Nagashima, Umpei

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Personalized Medicine and Proteomics:  Lessons from Non-Small Cell Lung Cancer von Marko-Varga, György, Ogiwara, Atsushi, Nishimura, Toshihide, Kawamura, Takeshi, Fujii, Kiyonaga, Kawakami, Takao, Kyono, Yutaka, Tu, Hsiao-kun, Anyoji, Hisae, Kanazawa, Mitsuhiro, Akimoto, Shingo, Hirano, Takashi, Tsuboi, Masahiro, Nishio, Kazuto, Hada, Shuji, Jiang, Haiyi, Fukuoka, Masahiro, Nakata, Kouichiro, Nishiwaki, Yutaka, Kunito, Hideo, Peers, Ian S, Harbron, Chris G, South, Marie C, Higenbottam, Tim, Nyberg, Fredrik, Kudoh, Shoji, Kato, Harubumi

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Quantitative Proteomic Analysis System: i- OPAL von KANAZAWA, Mitsuhiro, ANYOJI, Hisae, TU, Hsiao-kun, NAGASHIMA, Umpei, OGIWARA, Atsushi

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Searching for amino acid sequence motifs among enzymes: the Enzyme–Reaction Database von Suyama, Mikita, Ogiwara, Atsushi, Nishioka, Takaaki, Oda, Jun'ichi

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