KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold von Aramaki, Takuya, Blanc-Mathieu, Romain, Endo, Hisashi, Ohkubo, Koichi, Kanehisa, Minoru, Goto, Susumu, Ogata, Hiroyuki

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Type III Polyketide Synthases: Functional Classification and Phylogenomics von Shimizu, Yugo, Ogata, Hiroyuki, Goto, Susumu

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Eukaryotic plankton diversity in the sunlit ocean von de Vargas, C., Audic, S., Henry, N., Decelle, J., Mahé, F., Logares, R., Lara, E., Berney, C., Le Bescot, N., Probert, I., Carmichael, M., Poulain, J., Romac, S., Colin, S., Aury, J.-M., Bittner, L., Chaffron, S., Dunthorn, M., Engelen, S., Flegontova, O., Guidi, L., Horák, A., Jaillon, O., Lima-Mendez, G., Lukeš, J., Malviya, S., Morard, R., Mulot, M., Scalco, E., Siano, R., Vincent, F., Zingone, A., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Acinas, S. G., Bork, P., Bowler, C., Gorsky, G., Grimsley, N., Hingamp, P., Iudicone, D., Not, F., Ogata, H., Pesant, S., Raes, J., Sieracki, M. E., Speich, S., Stemmann, L., Sunagawa, S., Weissenbach, J., Wincker, P., Karsenti, E.

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A rapid genome‐wide analysis of isolated giant viruses using MinION sequencing von Hikida, Hiroyuki, Okazaki, Yusuke, Zhang, Ruixuan, Nguyen, Thi Tuyen, Ogata, Hiroyuki

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Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean von Endo, Hisashi, Ogata, Hiroyuki, Suzuki, Koji

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Tara Oceans: towards global ocean ecosystems biology von Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B., Wincker, Patrick, de Vargas, Colomban

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Genome‐resolved viral and cellular metagenomes revealed potential key virus‐host interactions in a deep freshwater lake von Okazaki, Yusuke, Nishimura, Yosuke, Yoshida, Takashi, Ogata, Hiroyuki, Nakano, Shin‐ichi

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Linking Virus Genomes with Host Taxonomy von Mihara, Tomoko, Nishimura, Yosuke, Shimizu, Yugo, Nishiyama, Hiroki, Yoshikawa, Genki, Uehara, Hideya, Hingamp, Pascal, Goto, Susumu, Ogata, Hiroyuki

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Taxon Richness of “Megaviridae” Exceeds those of Bacteria and Archaea in the Ocean von Mihara, Tomoko, Koyano, Hitoshi, Hingamp, Pascal, Grimsley, Nigel, Goto, Susumu, Ogata, Hiroyuki

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Giant Viruses Encode Actin-Related Proteins von Da Cunha, Violette, Gaia, Morgan, Ogata, Hiroyuki, Jaillon, Olivier, Delmont, Tom O, Forterre, Patrick

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The Evolution of Rag Gene Enhancers and Transcription Factor E and Id Proteins in the Adaptive Immune System von Yoshikawa, Genki, Miyazaki, Kazuko, Ogata, Hiroyuki, Miyazaki, Masaki

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DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics von Nishimura, Yosuke, Yamada, Kohei, Okazaki, Yusuke, Ogata, Hiroyuki

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Patterns of Rare and Abundant Marine Microbial Eukaryotes von Logares, Ramiro, Audic, Stéphane, Bass, David, Bittner, Lucie, Boutte, Christophe, Christen, Richard, Claverie, Jean-Michel, Decelle, Johan, Dolan, John R., Dunthorn, Micah, Edvardsen, Bente, Gobet, Angélique, Kooistra, Wiebe H.C.F., Mahé, Frédéric, Not, Fabrice, Ogata, Hiroyuki, Pawlowski, Jan, Pernice, Massimo C., Romac, Sarah, Shalchian-Tabrizi, Kamran, Simon, Nathalie, Stoeck, Thorsten, Santini, Sébastien, Siano, Raffaele, Wincker, Patrick, Zingone, Adriana, Richards, Thomas A., de Vargas, Colomban, Massana, Ramon

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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing von Massana, Ramon, Gobet, Angélique, Audic, Stéphane, Bass, David, Bittner, Lucie, Boutte, Christophe, Chambouvet, Aurélie, Christen, Richard, Claverie, Jean-Michel, Decelle, Johan, Dolan, John R., Dunthorn, Micah, Edvardsen, Bente, Forn, Irene, Forster, Dominik, Guillou, Laure, Jaillon, Olivier, Kooistra, Wiebe H. C. F., Logares, Ramiro, Mahé, Frédéric, Not, Fabrice, Ogata, Hiroyuki, Pawlowski, Jan, Pernice, Massimo C., Probert, Ian, Romac, Sarah, Richards, Thomas, Santini, Sébastien, Shalchian-Tabrizi, Kamran, Siano, Raffaele, Simon, Nathalie, Stoeck, Thorsten, Vaulot, Daniel, Zingone, Adriana, de Vargas, Colomban

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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities von Logares, Ramiro, Sunagawa, Shinichi, Salazar, Guillem, Cornejo‐Castillo, Francisco M, Ferrera, Isabel, Sarmento, Hugo, Hingamp, Pascal, Ogata, Hiroyuki, Vargas, Colomban, Lima‐Mendez, Gipsi, Raes, Jeroen, Poulain, Julie, Jaillon, Olivier, Wincker, Patrick, Kandels‐Lewis, Stefanie, Karsenti, Eric, Bork, Peer, Acinas, Silvia G

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Functional Differentiation among the Arabidopsis Phosphatidylinositol 4-Phosphate 5-Kinase Genes PIP5K1, PIP5K2 and PIP5K3 von Watari, Machiko, Kato, Mariko, Blanc-Mathieu, Romain, Tsuge, Tomohiko, Ogata, Hiroyuki, Aoyama, Takashi

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Discriminating the reaction types of plant type III polyketide synthases von Shimizu, Yugo, Ogata, Hiroyuki, Goto, Susumu

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In silico Prediction of Virus-Host Interactions for Marine Bacteroidetes With the Use of Metagenome-Assembled Genomes von Tominaga, Kento, Morimoto, Daichi, Nishimura, Yosuke, Ogata, Hiroyuki, Yoshida, Takashi

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MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes von Arai, Wataru, Taniguchi, Takeaki, Goto, Susumu, Moriya, Yuki, Uehara, Hideya, Takemoto, Kazuhiro, Ogata, Hiroyuki, Takami, Hideto

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The complete genomic sequence of the novel myovirus RP13 infecting Ralstonia solanacearum, the causative agent of bacterial wilt von Kawasaki, Takeru, Endo, Hisashi, Ogata, Hiroyuki, Chatchawankanphanich, Orawan, Yamada, Takashi

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