On a Numerical Model of a Circadian Oscillator von Akinshin, A. A, Ayupova, N. B, Golubyatnikov, V. P, Kirillova, N. E, Podkolodnaya, O. A, Podkolodnyy, N. L

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Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases von Filonov, S V, Podkolodnyy, N L, Podkolodnaya, O A, Tverdokhleb, N N, Ponomarenko, P M, Rasskazov, D A, Bogomolov, A G, Ponomarenko, M P

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Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL von Heinemeyer, T., Wingender, E., Reuter, I., Hermjakob, H., Kel, A. E., Kel, O. V., Ignatieva, E. V., Ananko, E. A., Podkolodnaya, O. A., Kolpakov, F. A., Podkolodny, N. L., Kolchanov, N. A.

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Transcription Regulatory Regions Database (TRRD): its status in 2002 von Kolchanov, N A, Ignatieva, E V, Ananko, E A, Podkolodnaya, O A, Stepanenko, I L, Merkulova, T I, Pozdnyakov, M A, Podkolodny, N L, Naumochkin, A N, Romashchenko, A G

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GeneNet in 2005 von Ananko, E. A., Podkolodny, N. L., Stepanenko, I. L., Podkolodnaya, O. A., Rasskazov, D. A., Miginsky, D. S., Likhoshvai, V. A., Ratushny, A. V., Podkolodnaya, N. N., Kolchanov, N. A.

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Molecular and genetic aspects of interactions of the circadian clock and the energy-producing substrate metabolism in mammals von Podkolodnaya, O. A.

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Erratum to: On a Numerical Model of a Circadian Oscillator von Akinshin, A. A, Ayupova, N. B, Golubyatnikov, V. P, Kirillova, N. E, Podkolodnaya, O. A, Podkolodnyy, N. L

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Promoters of genes encoding β-amylase, albumin and globulin in food plants have weaker affinity for TATA-binding protein as compared to non-food plants: in silico analysis von Vishnevsky, O V, Chadaeva, I V, Sharypova, E B, Khandaev, B M, Zolotareva, K A, Kazachek, A V, Ponomarenko, P M, Podkolodny, N L, Rasskazov, D A, Bogomolov, A G, Podkolodnaya, O A, Savinkova, L K, Zemlyanskaya, E V, Ponomarenko, M P

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Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis von Levitsky, Victor G., Podkolodnaya, Olga A., Kolchanov, Nikolay A., Podkolodny, Nikolay L.

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On Conditions for the Existence of Cycles in Two Models of a Circadian Oscillator of Mammals von Golubyatnikov, V. P., Podkolodnaya, O. A., Podkolodnyy, N. L., Ayupova, N. B., Kirillova, N. E., Yunosheva, E. V.

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Russian Science Foundation grant No. 20-14-00140 supported this study. The authors are thankful to the multi-access Center “Bioinformatics” for the use of computational resources a... von Vishnevsky, O. V., Chadaeva, I. V., Sharypova, E. B., Khandaev, B. M., Zolotareva, K. A., Kazachek, A. V., Ponomarenko, P. M., Podkolodny, N. L., Rasskazov, D. A., Zemlyanskaya, E. V., Bogomolov, A. G., Podkolodnaya, O. A., Savinkova, L. K., Ponomarenko, M. P.

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Ontologies in bioinformatics and systems biology von Podkolodnyy, N. L., Podkolodnaya, O. A.

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Analysis of the circadian rhythm of biological processes in mouse liver and kidney von Podkolodnyy, I. N., Tverdokhleb, N. N., Podkolodnaya, O. A.

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Computational model of circadian oscillator in mammals: Interaction with NAD+/SIRT1 system and age-related changes in the expression of circadian oscillator genes von Podkolodnyy, N. L., Tverdokhleb, N. N., Podkolodnaya, O. A.

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Computational model for mammalian circadian oscillator: interacting with NAD+/SIRT1 pathway and age-related changes in gene expression of circadian oscillator von Podkolodnyy, N. L., Tverdokhleb, N. N., Podkolodnaya, O. A.

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Ontologies in bioinformatics and systems biology von N. L. Podkolodnyy, O. A. Podkolodnaya

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Nucleosome formation potential of exons, introns, and Alu repeats von Levitsky, Victor G., Podkolodnaya, Olga A., Kolchanov, Nikolay A., Podkolodny, Nikolay L.

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Effects of SNPs in the positioning regions of RNA polymerase II on the TBP/promoter affinity in genes of the human circadian clock von Podkolodnaya, O. A., Rasskazov, D. A., Podkolodnyy, N. L., Podkolodnaya, N. N., Suslov, V. V., Savinkova, L. K., Ponomarenko, P. M., Ponomarenko, M. P.

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GeneNet: a database on structure and functional organisation of gene networks von Ananko, E A, Podkolodny, N L, Stepanenko, I L, Ignatieva, E V, Podkolodnaya, O A, Kolchanov, N A

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Molecular mechanisms of the interaction between the processes of the cell response to mechanical stress and neuronal apoptosis in primary open-angle glaucoma von Saik, O. V., Konovalova, N. A., Demenkov, P. S., Ivanisenko, N. V., Ivanisenko, T. V., Ivanoshchuk, D. E., Konovalova, O. S., Podkolodnaya, O. A., Lavrik, I. N., Kolchanov, N. A., Ivanisenko, V. A.

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