The order-preserving pattern matching problem in practice von Cantone, Domenico, Faro, Simone, Külekci, M. Oğuzhan

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A Survey on Shortest Unique Substring Queries von Abedin, Paniz, Külekci, M., Thankachan, Shama

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Efficient Algorithms for the Order Preserving Pattern Matching Problem von Faro, Simone, Külekci, M. Oğuzhan

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Fast and flexible packed string matching von Faro, Simone, Külekci, M. Oğuzhan

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On scrambling the Burrows–Wheeler transform to provide privacy in lossless compression von Oğuzhan Külekci, M.

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I/O-efficient data structures for non-overlapping indexing von Hooshmand, Sahar, Abedin, Paniz, Oğuzhan Külekci, M., Thankachan, Sharma V.

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BLIM: A New Bit-Parallel Pattern Matching Algorithm Overcoming Computer Word Size Limitation von Külekci, M. Oğuzhan

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Inverse Range Selection Queries von Külekci, M. Oğuzhan

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Engineering order‐preserving pattern matching with SIMD parallelism von Chhabra, Tamanna, Faro, Simone, Külekci, M. Oğuzhan, Tarhio, Jorma

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A simple yet time-optimal and linear-space algorithm for shortest unique substring queries von İleri, Atalay Mert, Külekci, M. Oğuzhan, Xu, Bojian

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Range selection and predecessor queries in data aware space and time von Külekci, M. Oğuzhan, Thankachan, Sharma V.

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Quality Assessment of High-Throughput DNA Sequencing Data via Range Analysis von Fotouhi, Ali, Majidi, Mina, Külekci, M. Oğuzhan

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Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform and Wavelet Tree von Kulekci, M. O., Vitter, J. S., Bojian Xu

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Sketching algorithms for genomic data analysis and querying in a secure enclave von Kockan, Can, Zhu, Kaiyuan, Dokmai, Natnatee, Karpov, Nikolai, Kulekci, M. Oguzhan, Woodruff, David P., Sahinalp, S. Cenk

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Privacy–Preserving Text Similarity via Non-Prefix-Free Codes von Külekci, M. Oğuzhan, Habib, Ismail, Aghabaiglou, Amir

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Ψ-RA: a parallel sparse index for genomic read alignment von Oğuzhan Külekci, M, Hon, Wing-Kai, Shah, Rahul, Scott Vitter, Jeffrey, Xu, Bojian

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Huffman Codes versus Augmented Non-Prefix-Free Codes von Adaş, Boran, Bayraktar, Ersin, Külekci, M. Oğuzhan

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Randomized Data Partitioning with Efficient Search, Retrieval and Privacy-Preservation von Külekci, M. Oğuzhan

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Fast Pattern-Matching via k-bit Filtering Based Text Decomposition von Külekci, M. O uzhan, Vitter, Jeffrey Scott, Xu, Bojian

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Fast Multiple String Matching Using Streaming SIMD Extensions Technology von Faro, Simone, Külekci, M. Oğuzhan

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