Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape von O’Malley, Ronan C., Huang, Shao-shan Carol, Song, Liang, Lewsey, Mathew G., Bartlett, Anna, Nery, Joseph R., Galli, Mary, Gallavotti, Andrea, Ecker, Joseph R.

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Mapping genome-wide transcription-factor binding sites using DAP-seq von Bartlett, Anna, O'Malley, Ronan C, Huang, Shao-shan Carol, Galli, Mary, Nery, Joseph R, Gallavotti, Andrea, Ecker, Joseph R

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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types von Shulse, Christine N., Cole, Benjamin J., Ciobanu, Doina, Lin, Junyan, Yoshinaga, Yuko, Gouran, Mona, Turco, Gina M., Zhu, Yiwen, O’Malley, Ronan C., Brady, Siobhan M., Dickel, Diane E.

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Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis von Lister, Ryan, O'Malley, Ronan C., Tonti-Filippini, Julian, Gregory, Brian D., Berry, Charles C., Millar, A. Harvey, Ecker, Joseph R.

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Persistence and plasticity in bacterial gene regulation von Baumgart, Leo A., Lee, Ji Eun, Salamov, Asaf, Dilworth, David J., Na, Hyunsoo, Mingay, Matthew, Blow, Matthew J., Zhang, Yu, Yoshinaga, Yuko, Daum, Chris G., O’Malley, Ronan C.

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Transcriptome and DNA methylome divergence of inflorescence development between 2 ecotypes in Panicum hallii von Weng, Xiaoyu, Song, Haili, Sreedasyam, Avinash, Haque, Taslima, Zhang, Li, Chen, Cindy, Yoshinaga, Yuko, Williams, Melissa, O’Malley, Ronan C, Grimwood, Jane, Schmutz, Jeremy, Juenger, Thomas E

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Phased diploid genome assembly with single-molecule real-time sequencing von Chin, Chen-Shan, Peluso, Paul, Sedlazeck, Fritz J, Nattestad, Maria, Concepcion, Gregory T, Clum, Alicia, Dunn, Christopher, O'Malley, Ronan, Figueroa-Balderas, Rosa, Morales-Cruz, Abraham, Cramer, Grant R, Delledonne, Massimo, Luo, Chongyuan, Ecker, Joseph R, Cantu, Dario, Rank, David R, Schatz, Michael C

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells von Lister, Ryan, Pelizzola, Mattia, Kida, Yasuyuki S., Hawkins, R. David, Nery, Joseph R., Hon, Gary, Antosiewicz-Bourget, Jessica, O’Malley, Ronan, Castanon, Rosa, Klugman, Sarit, Downes, Michael, Yu, Ruth, Stewart, Ron, Ren, Bing, Thomson, James A., Evans, Ronald M., Ecker, Joseph R.

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The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram von Prigge, Michael J, Greenham, Kathleen, Zhang, Yi, Santner, Aaron, Castillejo, Cristina, Mutka, Andrew M, O’Malley, Ronan C, Ecker, Joseph R, Kunkel, Barbara N, Estelle, Mark

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The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus von Wu, Vincent W., Thieme, Nils, Huberman, Lori B., Dietschmann, Axel, Kowbel, David J., Lee, Juna, Calhoun, Sara, Singan, Vasanth R., Lipzen, Anna, Xiong, Yi, Monti, Remo, Blow, Matthew J., O’Malley, Ronan C., Grigoriev, Igor V., Benz, J. Philipp, Glass, N. Louise

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IgG4 Disease-Related Ataxia von Hadjivassiliou, Marios, Blackburn, Daniel, O’Malley, Ronan, Hoggard, Nigel

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A Qualitative Meta-Analysis Exploring Client-Reported Outcomes of Couple Therapy von O'Malley, Ronan, Glenny, Rebecca, Poppleton, Simone, Timulak, Ladislav

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CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping von Wanamaker, Shelly A, Garza, Renee M, MacWilliams, Andrew, Nery, Joseph R, Bartlett, Anna, Castanon, Rosa, Goubil, Adeline, Feeney, Joseph, O'Malley, Ronan, Huang, Shao-shan C, Zhang, Zhuzhu Z, Galli, Mary, Ecker, Joseph R

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Rear-Lamp Vehicle Detection and Tracking in Low-Exposure Color Video for Night Conditions von O'Malley, Ronan, Jones, Edward, Glavin, Martin

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Voltage-dependent gating of SV channel TPC1 confers vacuole excitability von Jaślan, Dawid, Dreyer, Ingo, Lu, Jinping, O’Malley, Ronan, Dindas, Julian, Marten, Irene, Hedrich, Rainer

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DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus von Huberman, Lori B., Wu, Vincent W., Kowbel, David J., Lee, Juna, Daum, Chris, Grigoriev, Igor V., O’Malley, Ronan C., Glass, N. Louise

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The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle von Strenkert, Daniela, Yildirim, Asli, Yan, Juying, Yoshinaga, Yuko, Pellegrini, Matteo, O'Malley, Ronan C., Merchant, Sabeeha S., Umen, James G.

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The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis von Potok, Magdalena E, Zhong, Zhenhui, Picard, Colette L, Liu, Qikun, Do, Truman, Jacobsen, Cassidy E, Sakr, Ocean, Naranbaatar, Bilguudei, Thilakaratne, Ruwan, Khnkoyan, Zhanna, Purl, Megan, Cheng, Harrison, Vervaet, Helena, Feng, Suhua, Rayatpisheh, Shima, Wohlschlegel, James A, O'Malley, Ronan C, Ecker, Joseph R, Jacobsen, Steven E

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Genome Sequencing von Yoshinaga, Yuko, Daum, Christopher, He, Guifen, O’Malley, Ronan

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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics von Van Goethem, Marc W., Osborn, Andrew R., Bowen, Benjamin P., Andeer, Peter F., Swenson, Tami L., Clum, Alicia, Riley, Robert, He, Guifen, Koriabine, Maxim, Sandor, Laura, Yan, Mi, Daum, Chris G., Yoshinaga, Yuko, Makhalanyane, Thulani P., Garcia-Pichel, Ferran, Visel, Axel, Pennacchio, Len A., O’Malley, Ronan C., Northen, Trent R.

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