Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes von Andreev, Dmitry E, O'Connor, Patrick B F, Zhdanov, Alexander V, Dmitriev, Ruslan I, Shatsky, Ivan N, Papkovsky, Dmitri B, Baranov, Pavel V

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GWIPS-viz: 2018 update von Michel, Audrey M, Kiniry, Stephen J, O'Connor, Patrick B F, Mullan, James P, Baranov, Pavel V

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Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF von Loughran, Gary, Zhdanov, Alexander V., Mikhaylova, Maria S., Rozov, Fedor N., Datskevich, Petr N., Kovalchuk, Sergey I., Serebryakova, Marina V., Kiniry, Stephen J., Michel, Audrey M., O’Connor, Patrick B. F., Papkovsky, Dmitri B., Atkins, John F., Baranov, Pavel V., Shatsky, Ivan N., Andreev, Dmitry E.

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Translation of 5' leaders is pervasive in genes resistant to eIF2 repression von Andreev, Dmitry E, O'Connor, Patrick B F, Fahey, Ciara, Kenny, Elaine M, Terenin, Ilya M, Dmitriev, Sergey E, Cormican, Paul, Morris, Derek W, Shatsky, Ivan N, Baranov, Pavel V

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Insights into the mechanisms of eukaryotic translation gained with ribosome profiling von Andreev, Dmitry E, O'Connor, Patrick B F, Loughran, Gary, Dmitriev, Sergey E, Baranov, Pavel V, Shatsky, Ivan N

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GWIPS-viz: development of a ribo-seq genome browser von Michel, Audrey M, Fox, Gearoid, M Kiran, Anmol, De Bo, Christof, O'Connor, Patrick B F, Heaphy, Stephen M, Mullan, James P A, Donohue, Claire A, Higgins, Desmond G, Baranov, Pavel V

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AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation von Yordanova, Martina M., Loughran, Gary, Zhdanov, Alexander V., Mariotti, Marco, Kiniry, Stephen J., O’Connor, Patrick B. F., Andreev, Dmitry E., Tzani, Ioanna, Saffert, Paul, Michel, Audrey M., Gladyshev, Vadim N., Papkovsky, Dmitry B., Atkins, John F., Baranov, Pavel V.

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The Evolutionary Transition of the RNA World to Obcells to Cellular-Based Life von O’Connor, Patrick B. F.

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Translation initiation downstream from annotated start codons in human mRNAs coevolves with the Kozak context von Benitez-Cantos, Maria S, Yordanova, Martina M, O'Connor, Patrick B F, Zhdanov, Alexander V, Kovalchuk, Sergey I, Papkovsky, Dmitri B, Andreev, Dmitry E, Baranov, Pavel V

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Comparative survey of the relative impact of mRNA features on local ribosome profiling read density von O’Connor, Patrick B. F., Andreev, Dmitry E., Baranov, Pavel V.

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RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data von Michel, Audrey M., Mullan, James P. A., Velayudhan, Vimalkumar, O'Connor, Patrick B. F., Donohue, Claire A., Baranov, Pavel V.

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rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments von O'Connor, Patrick B F, Li, Gene-Wei, Weissman, Jonathan S, Atkins, John F, Baranov, Pavel V

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The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype von Dieudonné, Francois-Xavier, O'Connor, Patrick B F, Gubler-Jaquier, Pascale, Yasrebi, Haleh, Conne, Beatrice, Nikolaev, Sergey, Antonarakis, Stylianos, Baranov, Pavel V, Curran, Joseph

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Ribosome profiling reveals downregulation of UMP biosynthesis as the major early response to phage infection von O'Connor, Patrick B F, Mahony, Jennifer, Casey, Eoghan, Baranov, Pavel V, van Sinderen, Douwe, Yordanova, Martina M

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Trips-Viz: a transcriptome browser for exploring Ribo-Seq data von Kiniry, Stephen J, O’Connor, Patrick B F, Michel, Audrey M, Baranov, Pavel V

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Rocaglates Induce Gain-of-Function Alterations to eIF4A and eIF4F von Chu, Jennifer, Zhang, Wenhan, Cencic, Regina, O’Connor, Patrick B.F., Robert, Francis, Devine, William G., Selznick, Asher, Henkel, Thomas, Merrick, William C., Brown, Lauren E., Baranov, Pavel V., Porco, John A., Pelletier, Jerry

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Evaluating data integrity in ribosome footprinting datasets through modelled polysome profiles von Hedayioglu, Fabio, Mead, Emma J, O'Connor, Patrick B F, Skiotys, Matas, Sansom, Owen J, Mallucci, Giovanna R, Willis, Anne E, Baranov, Pavel V, Smales, C Mark, von der Haar, Tobias

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Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing von Antonov, Ivan V., O'Loughlin, Sinéad, Gorohovski, Alessandro N., O'Connor, Patrick B.F., Baranov, Pavel V., Atkins, John F.

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Polysomes Bypass a 50-Nucleotide Coding Gap Less Efficiently Than Monosomes Due to Attenuation of a 5′ mRNA Stem–Loop and Enhanced Drop-off von O'Loughlin, Sinéad, Capece, Mark C., Klimova, Mariia, Wills, Norma M., Coakley, Arthur, Samatova, Ekaterina, O'Connor, Patrick B.F., Loughran, Gary, Weissman, Jonathan S., Baranov, Pavel V., Rodnina, Marina V., Puglisi, Joseph D., Atkins, John F.

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In Vivo RNAi-Mediated eIF3m Knockdown Affects Ribosome Biogenesis and Transcription but Has Limited Impact on mRNA-Specific Translation von Smekalova, Elena M., Gerashchenko, Maxim V., O’Connor, Patrick B.F., Whittaker, Charles A., Kauffman, Kevin J., Fefilova, Anna S., Zatsepin, Timofei S., Bogorad, Roman L., Baranov, Pavel V., Langer, Robert, Gladyshev, Vadim N., Anderson, Daniel G., Koteliansky, Victor

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