The center for expanded data annotation and retrieval von Musen, Mark A, Bean, Carol A, Cheung, Kei-Hoi, Dumontier, Michel, Durante, Kim A, Gevaert, Olivier, Gonzalez-Beltran, Alejandra, Khatri, Purvesh, Kleinstein, Steven H, O’Connor, Martin J, Pouliot, Yannick, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Wiser, Jeffrey A

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The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories von Bukhari, Syed Ahmad Chan, O'Connor, Martin J, Martínez-Romero, Marcos, Egyedi, Attila L, Willrett, Debra, Graybeal, John, Musen, Mark A, Rubelt, Florian, Cheung, Kei-Hoi, Kleinstein, Steven H

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Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations von Martínez-Romero, Marcos, O'Connor, Martin J, Shankar, Ravi D, Panahiazar, Maryam, Willrett, Debra, Egyedi, Attila L, Gevaert, Olivier, Graybeal, John, Musen, Mark A

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Unleashing the value of Common Data Elements through the CEDAR Workbench von O'Connor, Martin J, Warzel, Denise B, Martínez-Romero, Marcos, Hardi, Josef, Willrett, Debra, Egyedi, Attila L, Eftekhari, Aras, Graybeal, John, Musen, Mark A

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Adaptive System for Collaborative Online Laboratories von Gravier, C., Fayolle, J., Lardon, J., O'Connor, M. J.

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Clustering rule bases using ontology-based similarity measures von Hassanpour, Saeed, O’Connor, Martin J., Das, Amar K.

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A semantic-based method for extracting concept definitions from scientific publications: evaluation in the autism phenotype domain von Hassanpour, Saeed, O'Connor, Martin J, Das, Amar K

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NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation von Martínez-Romero, Marcos, Jonquet, Clement, O'Connor, Martin J, Graybeal, John, Pazos, Alejandro, Musen, Mark A

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Modeling community standards for metadata as templates makes data FAIR von Musen, Mark A., O’Connor, Martin J., Schultes, Erik, Martínez-Romero, Marcos, Hardi, Josef, Graybeal, John

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The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments von Gonçalves, Rafael S., O’Connor, Martin J., Martínez-Romero, Marcos, Egyedi, Attila L., Willrett, Debra, Graybeal, John, Musen, Mark A.

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Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases von Martínez-Romero, Marcos, O'Connor, Martin J, Egyedi, Attila L, Willrett, Debra, Hardi, Josef, Graybeal, John, Musen, Mark A

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Evaluation of semantic-based information retrieval methods in the autism phenotype domain von Hassanpour, Saeed, O'Connor, Martin J, Das, Amar K

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Automated Tracking of Quantitative Assessments of Tumor Burden in Clinical Trials von Rubin, Daniel L, Willrett, Debra, O'Connor, Martin J, Hage, Cleber, Kurtz, Camille, Moreira, Dilvan A

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Semantic reasoning with image annotations for tumor assessment von Levy, Mia A, O'Connor, Martin J, Rubin, Daniel L

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Software-engineering challenges of building and deploying reusable problem solvers von O'Connor, Martin J., Nyulas, Csongor, Tu, Samson, Buckeridge, David L., Okhmatovskaia, Anna, Musen, Mark A.

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An ontology-driven method for hierarchical mining of temporal patterns: application to HIV drug resistance research von Raj, Rashmi, O'Connor, Martin J, Das, Amar K

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A Bayesian network model for analysis of detection performance in surveillance systems von Izadi, Masoumeh, Buckeridge, David, Okhmatovskaia, Anna, Tu, Samson W, O'Connor, Martin J, Nyulas, Csongor, Musen, Mark A

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Knowledge-data integration for temporal reasoning in a clinical trial system von O’Connor, Martin J, Shankar, Ravi D, Parrish, David B, Das, Amar K

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Translating research into practice: organizational issues in implementing automated decision support for hypertension in three medical centers von Goldstein, Mary K., Coleman, Robert W., Tu, Samson W., Shankar, Ravi D., O'Connor, Martin J., Musen, Mark A., Martins, Susana B., Lavori, Philip W., Shlipak, Michael G., Oddone, Eugene, Advani, Aneel A., Gholami, Parisa, Hoffman, Brian B.

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Ontology-driven mapping of temporal data in biomedical databases von Narayanan, Preetha S, O'Connor, Martin J, Das, Amar K

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