The accuracy of several multiple sequence alignment programs for proteins von Nuin, Paulo A S, Wang, Zhouzhi, Tillier, Elisabeth R M

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EMT transcription factors snail and slug directly contribute to cisplatin resistance in ovarian cancer von Haslehurst, Alexandria M, Koti, Madhuri, Dharsee, Moyez, Nuin, Paulo, Evans, Ken, Geraci, Joseph, Childs, Timothy, Chen, Jian, Li, Jieran, Weberpals, Johanne, Davey, Scott, Squire, Jeremy, Park, Paul C, Feilotter, Harriet

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WormBase: a modern Model Organism Information Resource von Harris, Todd W, Arnaboldi, Valerio, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, Davis, Paul, Gao, Sibyl, Grove, Christian A, Kishore, Ranjana, Lee, Raymond Y N, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Rodgers, Faye H, Russell, Matthew, Schindelman, Gary, Auken, Kimberly V, Wang, Qinghua, Williams, Gary, Wright, Adam J, Yook, Karen, Howe, Kevin L, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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WormBase 2016: expanding to enable helminth genomic research von Howe, Kevin L, Bolt, Bruce J, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Done, James, Down, Thomas, Gao, Sibyl, Grove, Christian, Harris, Todd W, Kishore, Ranjana, Lee, Raymond, Lomax, Jane, Li, Yuling, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Schindelman, Gary, Stanley, Eleanor, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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Cross-tolerance between osmotic and freeze-thaw stress in microbial assemblages from temperate lakes von Wilson, Sandra L., Frazer, Corey, Cumming, Brian F., Nuin, Paulo A.S., Walker, Virginia K.

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MicroRNA signature helps distinguish early from late biochemical failure in prostate cancer von Lichner, Zsuzsanna, Fendler, Annika, Saleh, Carol, Nasser, Aurfan N, Boles, Dina, Al-Haddad, Sahar, Kupchak, Peter, Dharsee, Moyez, Nuin, Paulo S, Evans, Kenneth R, Jung, Klaus, Stephan, Carsten, Fleshner, Neil E, Yousef, George M

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Variability of origin for the neocentromeric sequences in analphoid supernumerary marker chromosomes of well-differentiated liposarcomas von Italiano, Antoine, Maire, Georges, Sirvent, Nicolas, Nuin, Paulo A.S, Keslair, Frédérique, Foa, Cyril, Louis, Caroline, Aurias, Alain, Pedeutour, Florence

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Isolation of a Human Betaretrovirus from Patients with Primary Biliary Cholangitis von Goubran, Mariam, Wang, Weiwei, Indik, Stanislav, Faschinger, Alexander, Wasilenko, Shawn T, Bintner, Jasper, Carpenter, Eric J, Zhang, Guangzhi, Nuin, Paulo, Macintyre, Georgina, Wong, Gane K-S, Mason, Andrew L

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Transcriptional Profiling Implicates Novel Interactions between Abiotic Stress and Hormonal Responses in Thellungiella, a Close Relative of Arabidopsis von Wong, Chui E, Li, Yong, Labbe, Aurelie, Guevara, David, Nuin, Paulo, Whitty, Brett, Diaz, Claudia, Golding, G. Brian, Gray, Gordon R, Weretilnyk, Elizabeth A, Griffith, Marilyn, Moffatt, Barbara A

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No Correlation between the Molecular Subtype of COL1A1–PDGFB Fusion Gene and the Clinico-Histopathological Features of Dermatofibrosarcoma Protuberans von Giacchero, Damien, Maire, Georges, Nuin, Paulo A.S., Berthier, Frédéric, Ebran, Nathalie, Carlotti, Agnès, Celerier, Philippe, Coindre, Jean Michel, Esteve, Eric, Fraitag, Sylvie, Guillot, Bernard, Ranchere-Vince, Dominique, Saiag, Philippe, Terrier, Philippe, Lacour, Jean Philippe, Pedeutour, Florence

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SIMPROT: using an empirically determined indel distribution in simulations of protein evolution von Pang, Andy, Smith, Andrew D, Nuin, Paulo A S, Tillier, Elisabeth R M

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Design and Verification of a Pangenome Microarray Oligonucleotide Probe Set for Dehalococcoides spp von HUG, Laura A, SALEHI, Maryam, NUIN, Paulo, TILLIER, Elisabeth R, EDWARDS, Elizabeth A

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Transcriptomic and metabolomic analysis of Yukon Thellungiella plants grown in cabinets and their natural habitat show phenotypic plasticity von Guevara, David R, Champigny, Marc J, Tattersall, Ashley, Dedrick, Jeff, Wong, Chui E, Li, Yong, Labbe, Aurelie, Ping, Chien-Lu, Wang, Yanxiang, Nuin, Paulo, Golding, G Brian, McCarry, Brian E, Summers, Peter S, Moffatt, Barbara A, Weretilnyk, Elizabeth A

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WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans von Davis, Paul, Zarowiecki, Magdalena, Arnaboldi, Valerio, Becerra, Andrés, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, da Veiga Beltrame, Eduardo, Diamantakis, Stavros, Gao, Sibyl, Grigoriadis, Dionysis, Grove, Christian A, Harris, Todd W, Kishore, Ranjana, Le, Tuan, Lee, Raymond Y N, Luypaert, Manuel, Müller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Quinton-Tulloch, Mark, Raciti, Daniela, Rodgers, Faye H, Russell, Matthew, Schindelman, Gary, Singh, Archana, Stickland, Tim, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam J, Yook, Karen, Berriman, Matt, Howe, Kevin L, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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WinPop 2.5 : Software for representing population genetics phenomena von NUIN, Paulo A. S

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WormBase 2017: molting into a new stage von Lee, Raymond Y N, Howe, Kevin L, Harris, Todd W, Arnaboldi, Valerio, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Gao, Sibyl, Grove, Christian, Kishore, Ranjana, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Rodgers, Faye, Russell, Matt, Schindelman, Gary, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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WormBase 2024: status and transitioning to Alliance infrastructure von Sternberg, Paul W, Van Auken, Kimberly, Wang, Qinghua, Wright, Adam, Yook, Karen, Zarowiecki, Magdalena, Arnaboldi, Valerio, Becerra, Andrés, Brown, Stephanie, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, Davis, Paul, Diamantakis, Stavros, Dyer, Sarah, Grigoriadis, Dionysis, Grove, Christian A, Harris, Todd, Howe, Kevin, Kishore, Ranjana, Lee, Raymond, Longden, Ian, Luypaert, Manuel, Müller, Hans-Michael, Nuin, Paulo, Quinton-Tulloch, Mark, Raciti, Daniela, Schedl, Tim, Schindelman, Gary, Stein, Lincoln

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Harmonizing model organism data in the Alliance of Genome Resources von Agapite, Julie, Albou, Laurent-Philippe, Aleksander, Suzanne A, Alexander, Micheal, Anagnostopoulos, Anna V, Antonazzo, Giulia, Argasinska, Joanna, Arnaboldi, Valerio, Attrill, Helen, Becerra, Andrés, Bello, Susan M, Blake, Judith A, Blodgett, Olin, Bradford, Yvonne M, Bult, Carol J, Cain, Scott, Calvi, Brian R, Carbon, Seth, Chan, Juancarlos, Chen, Wen J, Michael Cherry, J, Cho, Jaehyoung, Christie, Karen R, Crosby, Madeline A, Davis, Paul, da Veiga Beltrame, Eduardo, De Pons, Jeffrey L, D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E, dos Santos, Gilberto, Douglass, Eric, Dunn, Barbara, Eagle, Anne, Ebert, Dustin, Engel, Stacia R, Fashena, David, Foley, Saoirse, Frazer, Ken, Gao, Sibyl, Gibson, Adam C, Gondwe, Felix, Goodman, Josh, Sian Gramates, L, Grove, Christian A, Hale, Paul, Harris, Todd, Thomas Hayman, G, Hill, David P, Howe, Douglas G, Howe, Kevin L, Hu, Yanhui, Jha, Sagar, Kadin, James A, Kaufman, Thomas C, Kalita, Patrick, Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E, Laulederkind, Stanley J F, Lee, Raymond, Longden, Ian, Luypaert, Manuel, MacPherson, Kevin A, Martin, Ryan, Marygold, Steven J, Matthews, Beverley, McAndrews, Monica S, Millburn, Gillian, Miyasato, Stuart, Motenko, Howie, Moxon, Sierra, Muller, Hans-Michael, Mungall, Christopher J, Muruganujan, Anushya, Mushayahama, Tremayne, Nalabolu, Harika S, Nash, Robert S, Ng, Patrick, Nuin, Paulo, Paddock, Holly, Paulini, Michael, Perrimon, Norbert, Pich, Christian, Quinton-Tulloch, Mark, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E, Gelbart, Susan Russo, Ruzicka, Leyla, Schaper, Kevin, Schindelman, Gary, Shimoyama, Mary, Simison, Matt, Shaw, David R, Shrivatsav, Ajay, Singer, Amy, Skrzypek, Marek, Smith, Constance M, Smith, Cynthia L

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FOXQ1 is differentially expressed across breast cancer subtypes and potentially can serve as a prognostic marker von Elian, Fahed A, Are, Ubah, Nuin, Paulo, Footz, Tim, Brindley, David N, McMullen, Todd PW, Walter, Michael A

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Updates to the Alliance of Genome Resources central infrastructure von Aleksander, Suzanne A, Anagnostopoulos, Anna V, Antonazzo, Giulia, Arnaboldi, Valerio, Attrill, Helen, Becerra, Andrés, Bello, Susan M, Blodgett, Olin, Bradford, Yvonne M, Bult, Carol J, Cain, Scott, Calvi, Brian R, Carbon, Seth, Chan, Juancarlos, Chen, Wen J, Cherry, J Michael, Cho, Jaehyoung, Crosby, Madeline A, De Pons, Jeffrey L, D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E, dos Santos, Gilberto, Dyer, Sarah, Ebert, Dustin, Engel, Stacia R, Fashena, David, Fisher, Malcolm, Foley, Saoirse, Gibson, Adam C, Gollapally, Varun R, Gramates, L Sian, Grove, Christian A, Hale, Paul, Harris, Todd, Hayman, G Thomas, Hu, Yanhui, James-Zorn, Christina, Karimi, Kamran, Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E, Laulederkind, Stanley J F, Lee, Raymond, Longden, Ian, Luypaert, Manuel, Markarian, Nicholas, Marygold, Steven J, Matthews, Beverley, McAndrews, Monica S, Millburn, Gillian, Miyasato, Stuart, Motenko, Howie, Moxon, Sierra, Muller, Hans-Michael, Mungall, Christopher J, Muruganujan, Anushya, Mushayahama, Tremayne, Nash, Robert S, Nuin, Paulo, Paddock, Holly, Pells, Troy, Perrimon, Norbert, Pich, Christian, Quinton-Tulloch, Mark, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E, Gelbart, Susan Russo, Ruzicka, Leyla, Schindelman, Gary, Shaw, David R, Sherlock, Gavin, Shrivatsav, Ajay, Singer, Amy, Smith, Constance M, Smith, Cynthia L, Smith, Jennifer R, Stein, Lincoln, Sternberg, Paul W, Tabone, Christopher J, Thomas, Paul D, Thorat, Ketaki, Thota, Jyothi, Tomczuk, Monika, Trovisco, Vitor, Tutaj, Marek A, Urbano, Jose-Maria, Van Auken, Kimberly, Van Slyke, Ceri E, Vize, Peter D, Wang, Qinghua, Weng, Shuai, Westerfield, Monte, Wilming, Laurens G, Wong, Edith D, Wright, Adam, Yook, Karen, Zhou, Pinglei, Zorn, Aaron

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