Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP) von Van Nostrand, Eric L, Pratt, Gabriel A, Shishkin, Alexander A, Gelboin-Burkhart, Chelsea, Fang, Mark Y, Sundararaman, Balaji, Blue, Steven M, Nguyen, Thai B, Surka, Christine, Elkins, Keri, Stanton, Rebecca, Rigo, Frank, Guttman, Mitchell, Yeo, Gene W

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Pooled CRISPR screens with imaging on microraft arrays reveals stress granule-regulatory factors von Wheeler, Emily C., Vu, Anthony Q., Einstein, Jaclyn M., DiSalvo, Matthew, Ahmed, Noorsher, Van Nostrand, Eric L., Shishkin, Alexander A., Jin, Wenhao, Allbritton, Nancy L., Yeo, Gene W.

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A large-scale binding and functional map of human RNA-binding proteins von Van Nostrand, Eric L., Freese, Peter, Pratt, Gabriel A., Wang, Xiaofeng, Wei, Xintao, Xiao, Rui, Blue, Steven M., Chen, Jia-Yu, Cody, Neal A. L., Dominguez, Daniel, Olson, Sara, Sundararaman, Balaji, Zhan, Lijun, Bazile, Cassandra, Bouvrette, Louis Philip Benoit, Bergalet, Julie, Duff, Michael O., Garcia, Keri E., Gelboin-Burkhart, Chelsea, Hochman, Myles, Lambert, Nicole J., Li, Hairi, McGurk, Michael P., Nguyen, Thai B., Palden, Tsultrim, Rabano, Ines, Sathe, Shashank, Stanton, Rebecca, Su, Amanda, Wang, Ruth, Yee, Brian A., Zhou, Bing, Louie, Ashley L., Aigner, Stefan, Fu, Xiang-Dong, Lécuyer, Eric, Burge, Christopher B., Graveley, Brenton R., Yeo, Gene W.

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Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq von Blue, Steven M., Yee, Brian A., Pratt, Gabriel A., Mueller, Jasmine R., Park, Samuel S., Shishkin, Alexander A., Starner, Anne C., Van Nostrand, Eric L., Yeo, Gene W.

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SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes von Brannan, Kristopher W., Jin, Wenhao, Huelga, Stephanie C., Banks, Charles A.S., Gilmore, Joshua M., Florens, Laurence, Washburn, Michael P., Van Nostrand, Eric L., Pratt, Gabriel A., Schwinn, Marie K., Daniels, Danette L., Yeo, Gene W.

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Resources for the Comprehensive Discovery of Functional RNA Elements von Sundararaman, Balaji, Zhan, Lijun, Blue, Steven M., Stanton, Rebecca, Elkins, Keri, Olson, Sara, Wei, Xintao, Van Nostrand, Eric L., Pratt, Gabriel A., Huelga, Stephanie C., Smalec, Brendan M., Wang, Xiaofeng, Hong, Eurie L., Davidson, Jean M., Lécuyer, Eric, Graveley, Brenton R., Yeo, Gene W.

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Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival von Conway, Anne E., Van Nostrand, Eric L., Pratt, Gabriel A., Aigner, Stefan, Wilbert, Melissa L., Sundararaman, Balaji, Freese, Peter, Lambert, Nicole J., Sathe, Shashank, Liang, Tiffany Y., Essex, Anthony, Landais, Severine, Burge, Christopher B., Jones, D. Leanne, Yeo, Gene W.

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Deactivation of the GATA Transcription Factor ELT-2 Is a Major Driver of Normal Aging in C. elegans von Mann, Frederick G, Van Nostrand, Eric L, Friedland, Ari E, Liu, Xiao, Kim, Stuart K

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Advances and challenges in the detection of transcriptome‐wide protein–RNA interactions von Wheeler, Emily C., Van Nostrand, Eric L., Yeo, Gene W.

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Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins von Van Nostrand, Eric L, Pratt, Gabriel A, Yee, Brian A, Wheeler, Emily C, Blue, Steven M, Mueller, Jasmine, Park, Samuel S, Garcia, Keri E, Gelboin-Burkhart, Chelsea, Nguyen, Thai B, Rabano, Ines, Stanton, Rebecca, Sundararaman, Balaji, Wang, Ruth, Fu, Xiang-Dong, Graveley, Brenton R, Yeo, Gene W

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Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements von Yeo, Gene W, Van Nostrand, Eric L, Nostrand, Eric L Van, Liang, Tiffany Y

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Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism von Scott, Daniel D, Trahan, Christian, Zindy, Pierre J, Aguilar, Lisbeth C, Delubac, Marc Y, Van Nostrand, Eric L, Adivarahan, Srivathsan, Wei, Karen E, Yeo, Gene W, Zenklusen, Daniel, Oeffinger, Marlene

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Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA von Yang, Ei-Wen, Bahn, Jae Hoon, Hsiao, Esther Yun-Hua, Tan, Boon Xin, Sun, Yiwei, Fu, Ting, Zhou, Bo, Van Nostrand, Eric L., Pratt, Gabriel A., Freese, Peter, Wei, Xintao, Quinones-Valdez, Giovanni, Urban, Alexander E., Graveley, Brenton R., Burge, Christopher B., Yeo, Gene W., Xiao, Xinshu

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Regulation of RNA editing by RNA-binding proteins in human cells von Quinones-Valdez, Giovanni, Tran, Stephen S., Jun, Hyun-Ik, Bahn, Jae Hoon, Yang, Ei-Wen, Zhan, Lijun, Brümmer, Anneke, Wei, Xintao, Van Nostrand, Eric L., Pratt, Gabriel A., Yeo, Gene W., Graveley, Brenton R., Xiao, Xinshu

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RBP-Maps enables robust generation of splicing regulatory maps von Yee, Brian A, Pratt, Gabriel A, Graveley, Brenton R, Van Nostrand, Eric L, Yeo, Gene W

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RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins von Benoit Bouvrette, Louis Philip, Wang, Xiaofeng, Boulais, Jonathan, Kong, Jian, Syed, Easin Uddin, Blue, Steven M, Zhan, Lijun, Olson, Sara, Stanton, Rebecca, Wei, Xintao, Yee, Brian, Van Nostrand, Eric L, Fu, Xiang-Dong, Burge, Christopher B, Graveley, Brenton R, Yeo, Gene W, Lécuyer, Eric

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RNA interacts with topoisomerase I to adjust DNA topology von Bhola, Mannan, Abe, Kouki, Orozco, Paola, Rahnamoun, Homa, Avila-Lopez, Pedro, Taylor, Elijah, Muhammad, Nefertiti, Liu, Bei, Patel, Prachi, Marko, John F., Starner, Anne C., He, Chuan, Van Nostrand, Eric L., Mondragón, Alfonso, Lauberth, Shannon M.

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The Inflammatory Transcription Factors NFκB, STAT1 and STAT3 Drive Age-Associated Transcriptional Changes in the Human Kidney von O'Brown, Zach K, Van Nostrand, Eric L, Higgins, John P, Kim, Stuart K

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Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program von Bieging-Rolett, Kathryn T., Kaiser, Alyssa M., Morgens, David W., Boutelle, Anthony M., Seoane, Jose A., Van Nostrand, Eric L., Zhu, Changyu, Houlihan, Shauna L., Mello, Stephano S., Yee, Brian A., McClendon, Jacob, Pierce, Sarah E., Winters, Ian P., Wang, Mengxiong, Connolly, Andrew J., Lowe, Scott W., Curtis, Christina, Yeo, Gene W., Winslow, Monte M., Bassik, Michael C., Attardi, Laura D.

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Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death von Arif, Waqar, Mathur, Bhoomika, Saikali, Michael F., Chembazhi, Ullas V., Toohill, Katelyn, Song, You Jin, Hao, Qinyu, Karimi, Saman, Blue, Steven M., Yee, Brian A., Van Nostrand, Eric L., Bangru, Sushant, Guzman, Grace, Yeo, Gene W., Prasanth, Kannanganattu V., Anakk, Sayeepriyadarshini, Cummins, Carolyn L., Kalsotra, Auinash

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