Chromosome Conformation Capture and Beyond: Toward an Integrative View of Chromosome Structure and Function von McCord, Rachel Patton, Kaplan, Noam, Giorgetti, Luca

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High-throughput genome scaffolding from in vivo DNA interaction frequency von Kaplan, Noam, Dekker, Job

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Structural organization of the inactive X chromosome in the mouse von Giorgetti, Luca, Lajoie, Bryan R., Carter, Ava C., Attia, Mikael, Zhan, Ye, Xu, Jin, Chen, Chong Jian, Kaplan, Noam, Chang, Howard Y., Heard, Edith, Dekker, Job

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Attenuated chromatin compartmentalization in meiosis and its maturation in sperm development von Alavattam, Kris G., Maezawa, So, Sakashita, Akihiko, Khoury, Haia, Barski, Artem, Kaplan, Noam, Namekawa, Satoshi H.

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A genome-wide nucleosome-resolution map of promoter-centered interactions in human cells corroborates the enhancer-promoter looping model von Golov, Arkadiy K, Gavrilov, Alexey A, Kaplan, Noam, Razin, Sergey V

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New insights into replication origin characteristics in metazoans von Cayrou, Christelle, Coulombe, Philippe, Puy, Aurore, Rialle, Stephanie, Kaplan, Noam, Segal, Eran, Méchali, Marcel

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Distinct modes of regulation by chromatin encoded through nucleosome positioning signals von Field, Yair, Kaplan, Noam, Fondufe-Mittendorf, Yvonne, Moore, Irene K, Sharon, Eilon, Lubling, Yaniv, Widom, Jonathan, Segal, Eran

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Study of mitotic chromatin supports a model of bookmarking by histone modifications and reveals nucleosome deposition patterns von Javasky, Elisheva, Shamir, Inbal, Gandhi, Shashi, Egri, Shawn, Sandler, Oded, Rothbart, Scott B, Kaplan, Noam, Jaffe, Jacob D, Goren, Alon, Simon, Itamar

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KMD clustering: robust general-purpose clustering of biological data von Zelig, Aviv, Kariti, Hagai, Kaplan, Noam

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High nucleosome occupancy is encoded at human regulatory sequences von Tillo, Desiree, Kaplan, Noam, Moore, Irene K, Fondufe-Mittendorf, Yvonne, Gossett, Andrea J, Field, Yair, Lieb, Jason D, Widom, Jonathan, Segal, Eran, Hughes, Timothy R

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Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization von Field, Yair, Fondufe-Mittendorf, Yvonne, Moore, Irene K, Mieczkowski, Piotr, Kaplan, Noam, Lubling, Yaniv, Lieb, Jason D, Widom, Jonathan, Segal, Eran

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DNA-guided establishment of nucleosome patterns within coding regions of a eukaryotic genome von Beh, Leslie Y, Müller, Manuel M, Muir, Tom W, Kaplan, Noam, Landweber, Laura F

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Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology von Kaplan, Noam, Hughes, Timothy R, Lieb, Jason D, Widom, Jonathan, Segal, Eran

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The Hitchhiker’s guide to Hi-C analysis: Practical guidelines von Lajoie, Bryan R., Dekker, Job, Kaplan, Noam

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Hypothesis-driven probabilistic modelling enables a principled perspective of genomic compartments von Kariti, Hagai, Feld, Tal, Kaplan, Noam

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Three invariant Hi-C interaction patterns: Applications to genome assembly von Oddes, Sivan, Zelig, Aviv, Kaplan, Noam

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A genome-wide nucleosome-resolution map of promoter-centered interactions in human cells corroborates the enhancer-promoter looping model von Golov, Arkadiy K, Gavrilov, Alexey A, Kaplan, Noam, Razin, Sergey V

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A functional hierarchical organization of the protein sequence space von Kaplan, Noam, Friedlich, Moriah, Fromer, Menachem, Linial, Michal

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Automatic detection of false annotations via binary property clustering von Kaplan, Noam, Linial, Michal

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Genome organization and DNA accessibility control antigenic variation in trypanosomes von Müller, Laura S. M., Cosentino, Raúl O., Förstner, Konrad U., Guizetti, Julien, Wedel, Carolin, Kaplan, Noam, Janzen, Christian J., Arampatzi, Panagiota, Vogel, Jörg, Steinbiss, Sascha, Otto, Thomas D., Saliba, Antoine-Emmanuel, Sebra, Robert P., Siegel, T. Nicolai

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