Multiplexed miRNA northern blots via hybridization chain reaction von Schwarzkopf, Maayan, Pierce, Niles A

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Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust von Choi, Harry M T, Schwarzkopf, Maayan, Fornace, Mark E, Acharya, Aneesh, Artavanis, Georgios, Stegmaier, Johannes, Cunha, Alexandre, Pierce, Niles A

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Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability von Choi, Harry M. T, Beck, Victor A, Pierce, Niles A

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Single-molecule RNA detection at depth by hybridization chain reaction and tissue hydrogel embedding and clearing von Shah, Sheel, Lubeck, Eric, Schwarzkopf, Maayan, He, Ting-Fang, Greenbaum, Alon, Sohn, Chang Ho, Lignell, Antti, Choi, Harry M T, Gradinaru, Viviana, Pierce, Niles A, Cai, Long

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Programmable in situ amplification for multiplexed imaging of mRNA expression von Pierce, Niles A, Choi, Harry M T, Chang, Joann Y, Trinh, Le A, Padilla, Jennifer E, Fraser, Scott E

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Programming biomolecular self-assembly pathways von Pierce, Niles A, Yin, Peng, Choi, Harry M. T, Calvert, Colby R

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Constrained Multistate Sequence Design for Nucleic Acid Reaction Pathway Engineering von Wolfe, Brian R, Porubsky, Nicholas J, Zadeh, Joseph N, Dirks, Robert M, Pierce, Niles A

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Nucleic acid sequence design via efficient ensemble defect optimization von Zadeh, Joseph N., Wolfe, Brian R., Pierce, Niles A.

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Triggered Amplification by Hybridization Chain Reaction von Dirks, Robert M., Pierce, Niles A., Mayo, Stephen L.

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A Unified Dynamic Programming Framework for the Analysis of Interacting Nucleic Acid Strands: Enhanced Models, Scalability, and Speed von Fornace, Mark E., Porubsky, Nicholas J., Pierce, Niles A.

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Hybridization chain reaction enables a unified approach to multiplexed, quantitative, high-resolution immunohistochemistry and in situ hybridization von Schwarzkopf, Maayan, Liu, Mike C, Schulte, Samuel J, Ives, Rachel, Husain, Naeem, Choi, Harry M T, Pierce, Niles A

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NUPACK: Analysis and design of nucleic acid systems von Zadeh, Joseph N, Steenberg, Conrad D, Bois, Justin S, Wolfe, Brian R, Pierce, Marshall B, Khan, Asif R, Dirks, Robert M, Pierce, Niles A

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Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos von Trivedi, Vikas, Choi, Harry M T, Fraser, Scott E, Pierce, Niles A

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Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function in Bacterial and Mammalian Cells via Dynamic RNA Nanotechnology von Hanewich-Hollatz, Mikhail H, Chen, Zhewei, Hochrein, Lisa M, Huang, Jining, Pierce, Niles A

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A Synthetic DNA Walker for Molecular Transport von Shin, Jong-Shik, Pierce, Niles A

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Macrophages and Dendritic Cells Are Not the Major Source of Pro-Inflammatory Cytokines Upon SARS-CoV-2 Infection von Niles, Marc A., Gogesch, Patricia, Kronhart, Stefanie, Ortega Iannazzo, Samira, Kochs, Georg, Waibler, Zoe, Anzaghe, Martina

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Multiplex, Quantitative, High-Resolution Imaging of Protein:Protein Complexes via Hybridization Chain Reaction von Schulte, Samuel J., Shin, Boyoung, Rothenberg, Ellen V., Pierce, Niles A.

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Developmental Self-Assembly of a DNA Tetrahedron von Sadowski, John P, Calvert, Colby R, Zhang, David Yu, Pierce, Niles A, Yin, Peng

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Implantable niche with local immunosuppression for islet allotransplantation achieves type 1 diabetes reversal in rats von Paez-Mayorga, Jesus, Campa-Carranza, Jocelyn Nikita, Capuani, Simone, Hernandez, Nathanael, Liu, Hsuan-Chen, Chua, Corrine Ying Xuan, Pons-Faudoa, Fernanda Paola, Malgir, Gulsah, Alvarez, Bella, Niles, Jean A., Argueta, Lissenya B., Shelton, Kathryn A., Kezar, Sarah, Nehete, Pramod N., Berman, Dora M., Willman, Melissa A., Li, Xian C., Ricordi, Camillo, Nichols, Joan E., Gaber, A. Osama, Kenyon, Norma S., Grattoni, Alessandro

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High-Performance Allosteric Conditional Guide RNAs for Mammalian Cell-Selective Regulation of CRISPR/Cas von Hochrein, Lisa M, Li, Heyun, Pierce, Niles A

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