Genomic indicators in the blood predict drug-induced liver injury von Huang, J, Shi, W, Zhang, J, Chou, J W, Paules, R S, Gerrish, K, Li, J, Luo, J, Wolfinger, R D, Bao, W, Chu, T-M, Nikolsky, Y, Nikolskaya, T, Dosymbekov, D, Tsyganova, M O, Shi, L, Fan, X, Corton, J C, Chen, M, Cheng, Y, Tong, W, Fang, H, Bushel, P R

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Consistency of predictive signature genes and classifiers generated using different microarray platforms von Fan, X, Lobenhofer, E K, Chen, M, Shi, W, Huang, J, Luo, J, Zhang, J, Walker, S J, Chu, T-M, Li, L, Wolfinger, R, Bao, W, Paules, R S, Bushel, P R, Li, J, Shi, T, Nikolskaya, T, Nikolsky, Y, Hong, H, Deng, Y, Cheng, Y, Fang, H, Shi, L, Tong, W

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meiotic recombination checkpoint controlled by mitotic checkpoint genes von Lydall, D, Nikolsky, Y, Bishop, D.K, Weinert, T

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Cytoscape: A Community-Based Framework for Network Modeling von Killcoyne, Sarah, Carter, Gregory W., Smith, Jennifer, Boyle, John

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Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms von Ekins, S., Bugrim, A., Brovold, L., Kirillov, E., Nikolsky, Y., Rakhmatulin, E., Sorokina, S., Ryabov, A., Serebryiskaya, T., Melnikov, A., Metz, J., Nikolskaya, T.

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Mathematical Justification of Expression-Based Pathway Activation Scoring (PAS) von Aliper, Alexander M., Korzinkin, Michael B., Kuzmina, Natalia B., Zenin, Alexander A., Venkova, Larisa S., Smirnov, Philip Yu, Zhavoronkov, Alex A., Buzdin, Anton A., Borisov, Nikolay M.

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Bioinformatics Meets Biomedicine: OncoFinder, a Quantitative Approach for Interrogating Molecular Pathways Using Gene Expression Data von Buzdin, Anton A., Prassolov, Vladimir, Zhavoronkov, Alex A., Borisov, Nikolay M.

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Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes von Shi, W, Bessarabova, M, Dosymbekov, D, Dezso, Z, Nikolskaya, T, Dudoladova, M, Serebryiskaya, T, Bugrim, A, Guryanov, A, Brennan, R J, Shah, R, Dopazo, J, Chen, M, Deng, Y, Shi, T, Jurman, G, Furlanello, C, Thomas, R S, Corton, J C, Tong, W, Shi, L, Nikolsky, Y

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A Weighted SNP Correlation Network Method for Estimating Polygenic Risk Scores von Levine, Morgan E., Langfelder, Peter, Horvath, Steve

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Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated “Knowledge-Based” Platform von Dubovenko, Alexey, Nikolsky, Yuri, Rakhmatulin, Eugene, Nikolskaya, Tatiana

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sbv IMPROVER: Modern Approach to Systems Biology von Guryanova, Svetlana, Guryanova, Anna

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ArrayTrack: An FDA and Public Genomic Tool von Fang, Hong, Harris, Stephen C., Su, Zhenjiang, Chen, Minjun, Qian, Feng, Shi, Leming, Perkins, Roger, Tong, Weida

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Analysis of cis-Regulatory Elements in Gene Co-expression Networks in Cancer von Triska, Martin, Ivliev, Alexander, Nikolsky, Yuri, Tatarinova, Tatiana V.

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Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments von Zolotarenko, Alena, Chekalin, Evgeny, Mehta, Rohini, Baranova, Ancha, Tatarinova, Tatiana V., Bruskin, Sergey

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Pharmacologic Manipulation of Wnt Signaling and Cancer Stem Cells von Duchartre, Yann, Kim, Yong-Mi, Kahn, Michael

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Mathematical Modeling of Avidity Distribution and Estimating General Binding Properties of Transcription Factors from Genome-Wide Binding Profiles von Kuznetsov, Vladimir A.

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Comprehensive Analyses of Tissue-Specific Networks with Implications to Psychiatric Diseases von Lin, Guan Ning, Corominas, Roser, Nam, Hyun-Jun, Urresti, Jorge, Iakoucheva, Lilia M.

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Semantic Data Integration and Knowledge Management to Represent Biological Network Associations von Losko, Sascha, Heumann, Klaus

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Functional Network Disruptions in Schizophrenia von Rish, Irina, Cecchi, Guillermo A.

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Search for Master Regulators in Walking Cancer Pathways von Kel, Alexander E.

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