Fast Polypharmacy Side Effect Prediction Using Tensor Factorisation von Lloyd, Oliver, Liu, Yi, Gaunt, Tom R

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MMOSurv: Meta-learning for few-shot survival analysis with multi-omics data von Wen, Gang, Li, Limin

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APAtizer: a tool for alternative polyadenylation analysis of RNA-Seq data von Sousa, Bruno, Bessa, Maria, de Mendonça, Filipa L, Ferreira, Pedro G, Moreira, Alexandra, Pereira-Castro, Isabel

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M2ara : unraveling metabolomic drug responses in whole-cell MALDI mass spectrometry bioassays von Enzlein, Thomas, Geisel, Alexander, Hopf, Carsten, Schmidt, Stefan

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Deep coupled registration and segmentation of multimodal whole-brain images von Han, Tingting, Wu, Jun, Sheng, Pengpeng, Li, Yuanyuan, Tao, ZaiYang, Qu, Lei

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k-nonical space: sketching with reverse complements von Marçais, Guillaume, Elder, C S, Kingsford, Carl

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Sitetack: A deep learning model that improves PTM prediction by using known PTMs von Gutierrez, Clair S, Kassim, Alia A, Gutierrez, Benjamin D, Raines, Ronald T

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Drug repositioning with adaptive graph convolutional networks von Sun, Xinliang, Jia, Xiao, Lu, Zhangli, Tang, Jing, Li, Min

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Identifying nucleotide-binding leucine-rich repeat receptor and pathogen effector pairing using transfer-learning and bilinear attention network von Qiao, Baixue, Wang, Shuda, Hou, Mingjun, Chen, Haodi, Zhou, Zhengwenyang, Xie, Xueying, Pang, Shaozi, Yang, Chunxue, Yang, Fenglong, Zou, Quan, Sun, Shanwen

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MPRAVarDB: an online database and web server for exploring regulatory effects of genetic variants von Jin, Weijia, Xia, Yi, Nizomov, Javlon, Liu, Yunlong, Li, Zhigang, Lu, Qing, Chen, Li

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vSPACE: exploring virtual spatial representation of articular chondrocytes at the single-cell level von Zhang, Chenyu, Wang, Honglin, Chung, Yeonsoo, Hong, Seung-Hyun, Olmer, Merissa, Swahn, Hannah, Lotz, Martin, Maye, Peter, Rowe, David, Shin, Dong-Guk

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Multi-Omic Graph Diagnosis (MOGDx): a data integration tool to perform classification tasks for heterogeneous diseases von Ryan, Barry, Marioni, Riccardo E, Simpson, T Ian

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mgikit: demultiplexing toolkit for MGI fastq files von Al Bkhetan, Ziad, Wang, Sen

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SpatialOne: end-to-end analysis of visium data at scale von Kamel, Mena, Sarangi, Amrut, Senin, Pavel, Villordo, Sergio, Sunaal, Mathew, Barot, Het, Wang, Seqian, Solbas, Ana, Cano, Luis, Classe, Marion, Bar-Joseph, Ziv, Pla Planas, Albert

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BenchStab: a tool for automated querying of web-based stability predictors von Velecký, Jan, Berezný, Matej, Musil, Milos, Damborsky, Jiri, Bednar, David, Mazurenko, Stanislav

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Deep5hmC: predicting genome-wide 5-hydroxymethylcytosine landscape via a multimodal deep learning model von Ma, Xin, Thela, Sai Ritesh, Zhao, Fengdi, Yao, Bing, Wen, Zhexing, Jin, Peng, Zhao, Jinying, Chen, Li

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BertSNR: an interpretable deep learning framework for single-nucleotide resolution identification of transcription factor binding sites based on DNA language model von Luo, Hanyu, Tang, Li, Zeng, Min, Yin, Rui, Ding, Pingjian, Luo, Lingyun, Li, Min

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GRIEVOUS: your command-line general for resolving cross-dataset genotype inconsistencies von Talwar, James V, Klie, Adam, Pagadala, Meghana S, Carter, Hannah

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Single-cell and spatial multiomic inference of gene regulatory networks using SCRIPro von Chang, Zhanhe, Xu, Yunfan, Dong, Xin, Gao, Yawei, Wang, Chenfei

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TransGEM: a molecule generation model based on Transformer with gene expression data von Liu, Yanguang, Yu, Hailong, Duan, Xinya, Zhang, Xiaomin, Cheng, Ting, Jiang, Feng, Tang, Hao, Ruan, Yao, Zhang, Miao, Zhang, Hongyu, Zhang, Qingye

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