The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology von Oude Munnink, Bas B., Worp, Nathalie, Nieuwenhuijse, David F., Sikkema, Reina S., Haagmans, Bart, Fouchier, Ron A. M., Koopmans, Marion

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Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans von Munnink, Bas B. Oude, Sikkema, Reina S., Nieuwenhuijse, David F., Molenaar, Robert Jan, Munger, Emmanuelle, Molenkamp, Richard, van der Spek, Arco, Tolsma, Paulien, Rietveld, Ariene, Brouwer, Miranda, Bouwmeester-Vincken, Noortje, Harders, Frank, Hakze-van der Honing, Renate, Wegdam-Blans, Marjolein C. A., Bouwstra, Ruth J., GeurtsvanKessel, Corine, van der Eijk, Annemiek A., Velkers, Francisca C., Smit, Lidwien A. M., Stegeman, Arjan, van der Poel, Wim H. M., Koopmans, Marion P. G.

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Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium von Izquierdo-Lara, Ray, Elsinga, Goffe, Heijnen, Leo, Munnink, Bas B. Oude, Schapendonk, Claudia M. E., Nieuwenhuijse, David, Kon, Matthijs, Lu, Lu, Aarestrup, Frank M., Lycett, Samantha, Medema, Gertjan, Koopmans, Marion P. G., de Graaf, Miranda

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Studies into the mechanism of measles-associated immune suppression during a measles outbreak in the Netherlands von Laksono, Brigitta M., de Vries, Rory D., Verburgh, R. Joyce, Visser, Eline G., de Jong, Alwin, Fraaij, Pieter L. A., Ruijs, Wilhemina L. M., Nieuwenhuijse, David F., van den Ham, Henk-Jan, Koopmans, Marion P. G., van Zelm, Menno C., Osterhaus, Albert D. M. E., de Swart, Rik L.

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COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study von Sikkema, Reina S, Pas, Suzan D, Nieuwenhuijse, David F, O'Toole, Áine, Verweij, Jaco, van der Linden, Anne, Chestakova, Irina, Schapendonk, Claudia, Pronk, Mark, Lexmond, Pascal, Bestebroer, Theo, Overmars, Ronald J, van Nieuwkoop, Stefan, van den Bijllaardt, Wouter, Bentvelsen, Robbert G, van Rijen, Miranda M L, Buiting, Anton G M, van Oudheusden, Anne J G, Diederen, Bram M, Bergmans, Anneke M C, van der Eijk, Annemiek, Molenkamp, Richard, Rambaut, Andrew, Timen, Aura, Kluytmans, Jan A J W, Oude Munnink, Bas B, Kluytmans van den Bergh, Marjolein F Q, Koopmans, Marion P G

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Virus Metagenomics in Farm Animals: A Systematic Review von Kwok, Kirsty T. T., Nieuwenhuijse, David F., Phan, My V. T., Koopmans, Marion P. G.

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Metagenomic Sequencing for Surveillance of Food- and Waterborne Viral Diseases von Nieuwenhuijse, David F, Koopmans, Marion P G

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The increasing complexity of arbovirus serology: An in-depth systematic review on cross-reactivity von Kasbergen, Louella M. R, Nieuwenhuijse, David F, de Bruin, Erwin, Sikkema, Reina S, Koopmans, Marion P. G

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Towards reliable whole genome sequencing for outbreak preparedness and response von Nieuwenhuijse, David F, van der Linden, Anne, Kohl, Robert H. G, Sikkema, Reina S, Koopmans, Marion P. G, Oude Munnink, Bas B

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Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands von Lu, Lu, Sikkema, Reina S., Velkers, Francisca C., Nieuwenhuijse, David F., Fischer, Egil A. J., Meijer, Paola A., Bouwmeester-Vincken, Noortje, Rietveld, Ariene, Wegdam-Blans, Marjolijn C. A., Tolsma, Paulien, Koppelman, Marco, Smit, Lidwien A. M., Hakze-van der Honing, Renate W., van der Poel, Wim H. M., van der Spek, Arco N., Spierenburg, Marcel A. H., Molenaar, Robert Jan, Rond, Jan de, Augustijn, Marieke, Woolhouse, Mark, Stegeman, J. Arjan, Lycett, Samantha, Oude Munnink, Bas B., Koopmans, Marion P. G.

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Systematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samples von Pipek, Orsolya Anna, Medgyes-Horváth, Anna, Stéger, József, Papp, Krisztián, Visontai, Dávid, Koopmans, Marion, Nieuwenhuijse, David, Oude Munnink, Bas B., Csabai, István

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Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters von Strubbia, Sofia, Schaeffer, Julien, Oude Munnink, Bas B., Besnard, Alban, Phan, My V. T., Nieuwenhuijse, David F., de Graaf, Miranda, Schapendonk, Claudia M. E., Wacrenier, Candice, Cotten, Matthew, Koopmans, Marion P. G., Le Guyader, Françoise S.

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Ongoing mpox outbreak in Kamituga, South Kivu province, associated with monkeypox virus of a novel Clade I sub-lineage, Democratic Republic of the Congo, 2024 von Masirika, Leandre Murhula, Udahemuka, Jean Claude, Schuele, Leonard, Ndishimye, Pacifique, Otani, Saria, Mbiribindi, Justin Bengehya, Marekani, Jean M, Mambo, Léandre Mutimbwa, Bubala, Nadine Malyamungu, Boter, Marjan, Nieuwenhuijse, David F, Lang, Trudie, Kalalizi, Ernest Balyahamwabo, Musabyimana, Jean Pierre, Aarestrup, Frank M, Koopmans, Marion, Oude Munnink, Bas B, Siangoli, Freddy Belesi

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Circulation, viral diversity and genomic rearrangement in mpox virus in the Netherlands during the 2022 outbreak and beyond von Schuele, Leonard, Boter, Marjan, Nieuwenhuijse, David F., Götz, Hannelore, Fanoy, Ewout, Vries, Henry, Vieyra, Bruno, Bavalia, Roisin, Hoornenborg, Elske, Molenkamp, Richard, Jonges, Marcel, Ouden, Anton, Simões, Margarida, Lubben, Mariken, Koopmans, Marion, Welkers, Matthijs R. A., Oude Munnink, Bas B.

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viromeBrowser: A Shiny App for Browsing Virome Sequencing Analysis Results von Nieuwenhuijse, David F., Munnink, Bas B. Oude, Koopmans, Marion P. G.

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Identification of mutations in SARS-CoV-2 PCR primer regions von Mentes, Anikó, Papp, Krisztián, Visontai, Dávid, Stéger, József, Csabai, István, Medgyes-Horváth, Anna, Pipek, Orsolya Anna

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Author Correction: The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology von Oude Munnink, Bas B., Worp, Nathalie, Nieuwenhuijse, David F., Sikkema, Reina S., Haagmans, Bart, Fouchier, Ron A. M., Koopmans, Marion

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Microcalorimetry: A Novel Application to Measure In Vitro Phage Susceptibility of Staphylococcus aureus in Human Serum von Molendijk, Michèle M, Phan, My V T, Bode, Lonneke G M, Strepis, Nikolas, Prasad, Divyae K, Worp, Nathalie, Nieuwenhuijse, David F, Schapendonk, Claudia M E, Boekema, Bouke K H L, Verbon, Annelies, Koopmans, Marion P G, Graaf, Miranda de, van Wamel, Willem J B

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A mixed-methods approach to elucidate SARS-CoV-2 transmission routes and clustering in outbreaks in native workers and labour migrants in the fruit and vegetable packaging industry... von Boogaard, Laura H., Sikkema, Reina S., van Beek, Janko H.G.M., Brockhoff, Henricus J., Dalebout, Eva, de Heus, Barry, Niemansburg, Sophie L., Nieuwenhuijse, David F., Stougje, Danny, Verspui, Ellen, Oude Munnink, Bas B., Koopmans, Marion P.G., Fanoy, Ewout B.

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Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example von Munnink, Bas B. Oude, Nieuwenhuijse, David F., Sikkema, Reina S., Koopmans, Marion

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