Evolution of Sensory Complexity Recorded in a Myxobacterial Genome von Goldman, B. S., Nierman, W. C., Kaiser, D., Slater, S. C., Durkin, A. S., Eisen, J. A., Ronning, C. M., Barbazuk, W. B., Blanchard, M., Field, C., Halling, C., Hinkle, G., Iartchuk, O., Kim, H. S., Mackenzie, C., Madupu, R., Miller, N., Shvartsbeyn, A., Sullivan, S. A., Vaudin, M., Wiegand, R., Kaplan, H. B., Eisen, J.

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Carbohydrate‐active enzymes revealed in Coptotermes formosanus (Isoptera: Rhinotermitidae) transcriptome von Zhang, D, Lax, A. R, Henrissat, B, Coutinho, P, Katiya, N, Nierman, W. C, Fedorova, N

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Amino acid supplementation reveals differential regulation of aflatoxin biosynthesis in Aspergillus flavus NRRL 3357 and Aspergillus parasiticus SRRC 143 von Wilkinson, J. R, Yu, J, Bland, J. M, Nierman, W. C, Bhatnagar, D, Cleveland, T. E

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Comparative genomic analysis of fruiting body formation in Myxococcales von Huntley, Stuart, Hamann, Nils, Wegener-Feldbrügge, Sigrun, Treuner-Lange, Anke, Kube, Michael, Reinhardt, Richard, Klages, Sven, Müller, Rolf, Ronning, Catherine M, Nierman, William C, Søgaard-Andersen, Lotte

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Transcriptome Analysis of Aspergillus flavus Reveals veA-Dependent Regulation of Secondary Metabolite Gene Clusters, Including the Novel Aflavarin Cluster von Cary, J W, Han, Z, Yin, Y, Lohmar, J M, Shantappa, S, Harris-Coward, P Y, Mack, B, Ehrlich, K C, Wei, Q, Arroyo-Manzanares, N, Uka, V, Vanhaecke, L, Bhatnagar, D, Yu, J, Nierman, W C, Johns, M A, Sorensen, D, Shen, H, De Saeger, S, Diana Di Mavungu, J, Calvo, A M

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Aspergillus flavus expressed sequence tags and microarray as tools in understanding aflatoxin biosynthesis von Yu, J., Cleveland, T. E., Wilkinson, J. R., Campbell, B. C., Kim, J. H., Kim, H. S., Bhatnagar, D., Payne, G. A., Nierman, W. C.

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Looking Beyond Respiratory Cultures: Microbiome‐Cytokine Signatures of Bacterial Pneumonia and Tracheobronchitis in Lung Transplant Recipients von Shankar, J., Nguyen, M. H., Crespo, M. M., Kwak, E. J., Lucas, S. K., McHugh, K. J., Mounaud, S., Alcorn, J. F., Pilewski, J. M., Shigemura, N., Kolls, J. K., Nierman, W. C., Clancy, C. J.

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Whole genome comparison of Aspergillus flavus and A. oryzae von Payne, G. A., Nierman, W. C., Wortman, J. R., Pritchard, B. L., Brown, D., Dean, R. A., Bhatnagar, D, Cleveland, T. E., Machida, Masayuki, Yu, J.

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Aflatoxin formation and gene expression in response to carbon source media shift in Aspergillus parasiticus von Wilkinson, J. R., Yu, J., Abbas, H. K., Scheffler, B. E., Kim, H. S., Nierman, W. C., Bhatnagar, D., Cleveland, T. E.

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DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae von Smith, Hamilton O, Peterson, Jeremy D, Nelson, Karen E, Gill, Steven R, Mekalanos, John J, Fleishmann, Robert D, McDonald, Lisa, Hickey, Erin K, Nierman, William C, Bass, Steven, Dragoi, Ioana, White, Owen, Tettelin, Hervé, Fraser, Claire M, Umayam, Lowell, Richardson, Delwood, Read, Timothy D, Ermolaeva, Maria D, Colwell, Rita R, Sellers, Patrick, Clayton, Rebecca A, Eisen, Jonathan A, Utterback, Teresa, Dodson, Robert J, Salzberg, Steven L, Venter, J. Craig, Gwinn, Michelle L, Haft, Daniel H, Vamathevan, Jessica, Qin, Haiying, Nelson, William C, Heidelberg, John F

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Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomics of a T4-Related Bacteriophage von Miller, Eric S, Heidelberg, John F, Eisen, Jonathan A, Nelson, William C, Durkin, A Scott, Ciecko, Ann, Feldblyum, Tamara V, White, Owen, Paulsen, Ian T, Nierman, William C, Lee, Jong, Szczypinski, Bridget, Fraser, Claire M

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Cryptococcus gattii comparative genomics and transcriptomics: a NIH/NIAID White Paper von Chaturvedi, V, Nierman, W C

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Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana von Lin, Xiaoying, Kaul, Samir, Rounsley, Steve, Shea, Terrance P, Benito, Maria-Ines, Town, Christopher D, Fujii, Claire Y, Mason, Tanya, Bowman, Cheryl L, Barnstead, Mary, Feldblyum, Tamara V, Buell, C. Robin, Ketchum, Karen A, Lee, John, Ronning, Catherine M, Koo, Hean L, Moffat, Kelly S, Cronin, Lisa A, Shen, Mian, Pai, Grace, Van Aken, Susan, Umayam, Lowell, Tallon, Luke J, Gill, John E, Adams, Mark D, Carrera, Ana J, Creasy, Todd H, Goodman, Howard M, Somerville, Chris R, Copenhaver, Greg P, Preuss, Daphne, Nierman, William C, White, Owen, Eisen, Jonathan A, Salzberg, Steven L, Fraser, Claire M, Venter, J. Craig

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What can comparative genomics tell us about species concepts in the genus Aspergillus? von Rokas, A., Payne, G., Fedorova, N.D., Baker, S.E., Machida, M., Yu, J., Georgianna, D. Ryan, Dean, Ralph A., Bhatnagar, Deepak, Cleveland, T.E., Wortman, J.R., Maiti, R., Joardar, V., Amedeo, P., Denning, D.W., Nierman, W.C.

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Cloning and characterization of a gene cluster for geldanamycin production in Streptomyces hygroscopicus NRRL 3602 von Rascher, Andreas, Hu, Zhihao, Viswanathan, Nina, Schirmer, Andreas, Reid, Ralph, Nierman, William C, Lewis, Matthew, Hutchinson, C.Richard

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What the Aspergillus genomes have told us von Nierman, W. C., May, G., Kim, H. S., Anderson, M. J., Chen, D., Denning, D. W.

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Mouse BAC ends quality assessment and sequence analyses von Zhao, S, Shatsman, S, Ayodeji, B, Geer, K, Tsegaye, G, Krol, M, Gebregeorgis, E, Shvartsbeyn, A, Russell, D, Overton, L, Jiang, L, Dimitrov, G, Tran, K, Shetty, J, Malek, J A, Feldblyum, T, Nierman, W C, Fraser, C M

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Genome-wide expression analysis of iron regulation in Burkholderia pseudomallei and Burkholderia mallei using DNA microarrays von Tuanyok, Apichai, Kim, H. Stanley, Nierman, William C., Yu, Yan, Dunbar, John, Moore, Richard A., Baker, Patricia, Tom, Marina, Ling, Jessmi M.L., Woods, Donald E.

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Whole genome comparison of the A. fumigatus family von Wortman, J. R., Fedorova, N., Crabtree, J., Joardar, V., Maiti, R., Haas, B. J., Amedeo, P., Lee, E., Angiuoli, S. V., Jiang, B., Anderson, M. J., Denning, D. W., White, O. R., Nierman, W. C.

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Potential of Aspergillus flavus genomics for applications in biotechnology von Cleveland, Thomas E, Yu, Jiujiang, Fedorova, Natalie, Bhatnagar, Deepak, Payne, Gary A, Nierman, William C, Bennett, Joan W

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