HIF1A signaling selectively supports proliferation of breast cancer in the brain von Ebright, Richard Y., Zachariah, Marcus A., Micalizzi, Douglas S., Wittner, Ben S., Niederhoffer, Kira L., Nieman, Linda T., Chirn, Brian, Wiley, Devon F., Wesley, Benjamin, Shaw, Brian, Nieblas-Bedolla, Edwin, Atlas, Lian, Szabolcs, Annamaria, Iafrate, Anthony J., Toner, Mehmet, Ting, David T., Brastianos, Priscilla K., Haber, Daniel A., Maheswaran, Shyamala

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Molecular signatures of circulating melanoma cells for monitoring early response to immune checkpoint therapy von Hong, Xin, Sullivan, Ryan J., Kalinich, Mark, Kwan, Tanya Todorova, Giobbie-Hurder, Anita, Pan, Shiwei, LiCausi, Joseph A., Milner, John D., Nieman, Linda T., Wittner, Ben S., Ho, Uyen, Chen, Tianqi, Kapur, Ravi, Lawrence, Donald P., Flaherty, Keith T., Sequist, Lecia V., Ramaswamy, Sridhar, Miyamoto, David T., Lawrence, Michael, Toner, Mehmet, Isselbacher, Kurt J., Maheswaran, Shyamala, Haber, Daniel A.

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Active RB causes visible changes in nuclear organization von Krishnan, Badri, Yasuhara, Takaaki, Rumde, Purva, Stanzione, Marcello, Lu, Chenyue, Lee, Hanjun, Lawrence, Michael S, Zou, Lee, Nieman, Linda T, Sanidas, Ioannis, Dyson, Nicholas J

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NR4A1 regulates expression of immediate early genes, suppressing replication stress in cancer von Guo, Hongshan, Golczer, Gabriel, Wittner, Ben S., Langenbucher, Adam, Zachariah, Marcus, Dubash, Taronish D., Hong, Xin, Comaills, Valentine, Burr, Risa, Ebright, Richard Y., Horwitz, Elad, Vuille, Joanna A., Hajizadeh, Soroush, Wiley, Devon F., Reeves, Brittany A., Zhang, Jia-min, Niederhoffer, Kira L., Lu, Chenyue, Wesley, Benjamin, Ho, Uyen, Nieman, Linda T., Toner, Mehmet, Vasudevan, Shobha, Zou, Lee, Mostoslavsky, Raul, Maheswaran, Shyamala, Lawrence, Michael S., Haber, Daniel A.

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Satellite repeat RNA expression in epithelial ovarian cancer associates with a tumor-immunosuppressive phenotype von Porter, Rebecca L, Sun, Siyu, Flores, Micayla N, Berzolla, Emily, You, Eunae, Phillips, Ildiko E, Kc, Neelima, Desai, Niyati, Tai, Eric C, Szabolcs, Annamaria, Lang, Evan R, Pankaj, Amaya, Raabe, Michael J, Thapar, Vishal, Xu, Katherine H, Nieman, Linda T, Rabe, Daniel C, Kolin, David L, Stover, Elizabeth H, Pepin, David, Stott, Shannon L, Deshpande, Vikram, Liu, Joyce F, Solovyov, Alexander, Matulonis, Ursula A, Greenbaum, Benjamin D, Ting, David T

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Tumor cell-based liquid biopsy using high-throughput microfluidic enrichment of entire leukapheresis product von Mishra, Avanish, Huang, Shih-Bo, Dubash, Taronish, Burr, Risa, Edd, Jon F., Wittner, Ben S., Cunneely, Quinn E., Putaturo, Victor R., Deshpande, Akansha, Antmen, Ezgi, Gopinathan, Kaustav A., Otani, Keisuke, Miyazawa, Yoshiyuki, Kwak, Ji Eun, Guay, Sara Y., Kelly, Justin, Walsh, John, Nieman, Linda T., Galler, Isabella, Chan, PuiYee, Lawrence, Michael S., Sullivan, Ryan J., Bardia, Aditya, Micalizzi, Douglas S., Sequist, Lecia V., Lee, Richard J., Franses, Joseph W., Ting, David T., Brunker, Patricia A. R., Maheswaran, Shyamala, Miyamoto, David T., Haber, Daniel A., Toner, Mehmet

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IDH-mutant gliomas harbor fewer regulatory T cells in humans and mice von Richardson, Leland G, Nieman, Linda T, Stemmer-Rachamimov, Anat O, Zheng, Xijin S, Stafford, Khalifa, Nagashima, Hiroaki, Miller, Julie J, Kiyokawa, Juri, Ting, David T, Wakimoto, Hiroaki, Cahill, Daniel P, Choi, Bryan D, Curry, William T

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In vivo hyperspectral confocal fluorescence imaging to determine pigment localization and distribution in cyanobacterial cells von Vermaas, Wim F.J, Timlin, Jerilyn A, Jones, Howland D.T, Sinclair, Michael B, Nieman, Linda T, Hamad, Sawsan W, Melgaard, David K, Haaland, David M

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Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection von Desai, Niyati, Neyaz, Azfar, Szabolcs, Annamaria, Shih, Angela R., Chen, Jonathan H., Thapar, Vishal, Nieman, Linda T., Solovyov, Alexander, Mehta, Arnav, Lieb, David J., Kulkarni, Anupriya S., Jaicks, Christopher, Xu, Katherine H., Raabe, Michael J., Pinto, Christopher J., Juric, Dejan, Chebib, Ivan, Colvin, Robert B., Kim, Arthur Y., Monroe, Robert, Warren, Sarah E., Danaher, Patrick, Reeves, Jason W., Gong, Jingjing, Rueckert, Erroll H., Greenbaum, Benjamin D., Hacohen, Nir, Lagana, Stephen M., Rivera, Miguel N., Sholl, Lynette M., Stone, James R., Ting, David T., Deshpande, Vikram

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The Lipogenic Regulator SREBP2 Induces Transferrin in Circulating Melanoma Cells and Suppresses Ferroptosis von Hong, Xin, Roh, Whijae, Sullivan, Ryan J, Wong, Keith H K, Wittner, Ben S, Guo, Hongshan, Dubash, Taronish D, Sade-Feldman, Moshe, Wesley, Benjamin, Horwitz, Elad, Boland, Genevieve M, Marvin, Dieuwke L, Bonesteel, Todd, Lu, Chenyue, Aguet, François, Burr, Risa, Freeman, Samuel S, Parida, Laxmi, Calhoun, Katherine, Jewett, Michelle K, Nieman, Linda T, Hacohen, Nir, Näär, Anders M, Ting, David T, Toner, Mehmet, Stott, Shannon L, Getz, Gad, Maheswaran, Shyamala, Haber, Daniel A

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Microfluidic concentration and separation of circulating tumor cell clusters from large blood volumes von Edd, Jon F, Mishra, Avanish, Dubash, Taronish D, Herrera, Stefan, Mohammad, Ridhwan, Williams, E. Kendall, Hong, Xin, Mutlu, Baris R, Walsh, John R, Machado de Carvalho, Fernanda, Aldikacti, Berent, Nieman, Linda T, Stott, Shannon L, Kapur, Ravi, Maheswaran, Shyamala, Haber, Daniel A, Toner, Mehmet

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Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy von Chen, Jonathan H., Nieman, Linda T., Spurrell, Maxwell, Jorgji, Vjola, Elmelech, Liad, Richieri, Peter, Xu, Katherine H., Madhu, Roopa, Parikh, Milan, Zamora, Izabella, Mehta, Arnav, Nabel, Christopher S., Freeman, Samuel S., Pirl, Joshua D., Lu, Chenyue, Meador, Catherine B., Barth, Jaimie L., Sakhi, Mustafa, Tang, Alexander L., Sarkizova, Siranush, Price, Colles, Fernandez, Nicolas F., Emanuel, George, He, Jiang, Van Raay, Katrina, Reeves, Jason W., Yizhak, Keren, Hofree, Matan, Shih, Angela, Sade-Feldman, Moshe, Boland, Genevieve M., Pelka, Karin, Aryee, Martin J., Mino-Kenudson, Mari, Gainor, Justin F., Korsunsky, Ilya, Hacohen, Nir

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Spatial transcriptomics reveals distinct tissue niches linked with steroid responsiveness in acute gastrointestinal GVHD von Patel, Bidish K., Raabe, Michael J., Lang, Evan R., Song, Yuhui, Lu, Chenyue, Deshpande, Vikram, Nieman, Linda T., Aryee, Martin J., Chen, Yi-Bin, Ting, David T., DeFilipp, Zachariah

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Single-cell transcriptomic analyses reveal distinct immune cell contributions to epithelial barrier dysfunction in checkpoint inhibitor colitis von Thomas, Molly Fisher, Slowikowski, Kamil, Manakongtreecheep, Kasidet, Sen, Pritha, Samanta, Nandini, Tantivit, Jessica, Nasrallah, Mazen, Zubiri, Leyre, Smith, Neal P., Tirard, Alice, Ramesh, Swetha, Arnold, Benjamin Y., Nieman, Linda T., Chen, Jonathan H., Eisenhaure, Thomas, Pelka, Karin, Song, Yuhui, Xu, Katherine H., Jorgji, Vjola, Pinto, Christopher J., Sharova, Tatyana, Glasser, Rachel, Chan, PuiYee, Sullivan, Ryan J., Khalili, Hamed, Juric, Dejan, Boland, Genevieve M., Dougan, Michael, Hacohen, Nir, Li, Bo, Reynolds, Kerry L., Villani, Alexandra-Chloé

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Selective targeting of MYC mRNA by stabilized antisense oligonucleotides von Gill, Taylor, Wang, Haichuan, Bandaru, Raj, Lawlor, Matthew, Lu, Chenyue, Nieman, Linda T., Tao, Junyan, Zhang, Yixian, Anderson, Daniel G., Ting, David T., Chen, Xin, Bradner, James E., Ott, Christopher J.

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Disruption of cellular plasticity by repeat RNAs in human pancreatic cancer von You, Eunae, Danaher, Patrick, Lu, Chenyue, Sun, Siyu, Zou, Luli, Phillips, Ildiko E., Rojas, Alexandra S., Ho, Natalie I., Song, Yuhui, Raabe, Michael J., Xu, Katherine H., Richieri, Peter M., Li, Hao, Aston, Natalie, Porter, Rebecca L., Patel, Bidish K., Nieman, Linda T., Schurman, Nathan, Hudson, Briana M., North, Khrystyna, Church, Sarah E., Deshpande, Vikram, Liss, Andrew S., Kim, Tae K., Cui, Yi, Kim, Youngmi, Greenbaum, Benjamin D., Aryee, Martin J., Ting, David T.

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Ultrasensitive Detection of Circulating LINE-1 ORF1p as a Specific Multicancer Biomarker von Taylor, Martin S, Wu, Connie, Fridy, Peter C, Zhang, Stephanie J, Senussi, Yasmeen, Wolters, Justina C, Cajuso, Tatiana, Cheng, Wen-Chih, Heaps, John D, Miller, Bryant D, Mori, Kei, Cohen, Limor, Jiang, Hua, Molloy, Kelly R, Chait, Brian T, Goggins, Michael G, Bhan, Irun, Franses, Joseph W, Yang, Xiaoyu, Taplin, Mary-Ellen, Wang, Xinan, Christiani, David C, Johnson, Bruce E, Meyerson, Matthew, Uppaluri, Ravindra, Egloff, Ann Marie, Denault, Elyssa N, Spring, Laura M, Wang, Tian-Li, Shih, Ie-Ming, Fairman, Jennifer E, Jung, Euihye, Arora, Kshitij S, Yilmaz, Osman H, Cohen, Sonia, Sharova, Tatyana, Chi, Gary, Norden, Bryanna L, Song, Yuhui, Nieman, Linda T, Pappas, Leontios, Parikh, Aparna R, Strickland, Matthew R, Corcoran, Ryan B, Mustelin, Tomas, Eng, George, Yilmaz, Ömer H, Matulonis, Ursula A, Chan, Andrew T, Skates, Steven J, Rueda, Bo R, Drapkin, Ronny, Klempner, Samuel J, Deshpande, Vikram, Ting, David T, Rout, Michael P, LaCava, John, Walt, David R, Burns, Kathleen H

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Cancer cells restrict immunogenicity of retrotransposon expression via distinct mechanisms von Sun, Siyu, You, Eunae, Hong, Jungeui, Hoyos, David, Del Priore, Isabella, Tsanov, Kaloyan M., Mattagajasingh, Om, Di Gioacchino, Andrea, Marhon, Sajid A., Chacon-Barahona, Jonathan, Li, Hao, Jiang, Hua, Hozeifi, Samira, Rosas-Bringas, Omar, Xu, Katherine H., Song, Yuhui, Lang, Evan R., Rojas, Alexandra S., Nieman, Linda T., Patel, Bidish K., Murali, Rajmohan, Chanda, Pharto, Karacay, Ali, Vabret, Nicolas, De Carvalho, Daniel D., Zenklusen, Daniel, LaCava, John, Lowe, Scott W., Ting, David T., Iacobuzio-Donahue, Christine A., Solovyov, Alexander, Greenbaum, Benjamin D.

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Immune responses in checkpoint myocarditis across heart, blood and tumour von Blum, Steven M., Zlotoff, Daniel A., Smith, Neal P., Kernin, Isabela J., Ramesh, Swetha, Zubiri, Leyre, Caplin, Joshua, Samanta, Nandini, Martin, Sidney, Wang, Mike, Tirard, Alice, Song, Yuhui, Xu, Katherine H., Barth, Jaimie, Sen, Pritha, Slowikowski, Kamil, Tantivit, Jessica, Manakongtreecheep, Kasidet, Arnold, Benjamin Y., Nasrallah, Mazen, Pinto, Christopher J., McLoughlin, Daniel, Jackson, Monica, Chan, PuiYee, Lawless, Aleigha, Michaud, William A., Sharova, Tatyana, Nieman, Linda T., Gainor, Justin F., Wu, Catherine J., Juric, Dejan, Mino-Kenudson, Mari, Oliveira, Giacomo, Sullivan, Ryan J., Boland, Genevieve M., Stone, James R., Thomas, Molly F., Neilan, Tomas G., Reynolds, Kerry L., Villani, Alexandra-Chloé

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Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer von Rajurkar, Mihir, Parikh, Aparna R, Solovyov, Alexander, You, Eunae, Kulkarni, Anupriya S, Chu, Chong, Xu, Katherine H, Jaicks, Christopher, Taylor, Martin S, Wu, Connie, Alexander, Katherine A, Good, Charly R, Szabolcs, Annamaria, Gerstberger, Stefanie, Tran, Antuan V, Xu, Nova, Ebright, Richard Y, Van Seventer, Emily E, Vo, Kevin D, Tai, Eric C, Lu, Chenyue, Joseph-Chazan, Jasmin, Raabe, Michael J, Nieman, Linda T, Desai, Niyati, Arora, Kshitij S, Ligorio, Matteo, Thapar, Vishal, Cohen, Limor, Garden, Padric M, Senussi, Yasmeen, Zheng, Hui, Allen, Jill N, Blaszkowsky, Lawrence S, Clark, Jeffrey W, Goyal, Lipika, Wo, Jennifer Y, Ryan, David P, Corcoran, Ryan B, Deshpande, Vikram, Rivera, Miguel N, Aryee, Martin J, Hong, Theodore S, Berger, Shelley L, Walt, David R, Burns, Kathleen H, Park, Peter J, Greenbaum, Benjamin D, Ting, David T

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