CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance von Nicholls, Samuel M., Poplawski, Radoslaw, Bull, Matthew J., Underwood, Anthony, Chapman, Michael, Abu-Dahab, Khalil, Taylor, Ben, Colquhoun, Rachel M., Rowe, Will P. M., Jackson, Ben, Hill, Verity, O'Toole, Aine, Rey, Sara, Southgate, Joel, Amato, Roberto, Livett, Rich, Goncalves, Sonia, Harrison, Ewan M., Peacock, Sharon J., Aanensen, David M., Rambaut, Andrew, Connor, Thomas R., Loman, Nicholas J.

Volltext

Ultra-deep, long-read nanopore sequencing of mock microbial community standards von Nicholls, Samuel M, Quick, Joshua C, Tang, Shuiquan, Loman, Nicholas J

Volltext

SARS-CoV-2 within-host diversity and transmission von Lythgoe, Katrina A., Hall, Matthew, Ferretti, Luca, de Cesare, Mariateresa, MacIntyre-Cockett, George, Trebes, Amy, Andersson, Monique, Otecko, Newton, Wise, Emma L., Moore, Nathan, Lynch, Jessica, Kidd, Stephen, Cortes, Nicholas, Mori, Matilde, Williams, Rebecca, Vernet, Gabrielle, Justice, Anita, Green, Angie, Nicholls, Samuel M., Ansari, M. Azim, Abeler-Dorner, Lucie, Moore, Catrin E., Peto, Timothy E. A., Eyre, David W., Shaw, Robert, Simmonds, Peter, Buck, David, Todd, John A., Connor, Thomas R., Ashraf, Shirin, Filipe, Ana da Silva, Shepherd, James, Thomson, Emma C., Bonsall, David, Fraser, Christophe, Golubchik, Tanya

Volltext

Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic von Jackson, Ben, Boni, Maciej F., Bull, Matthew J., Colleran, Amy, Colquhoun, Rachel M., Darby, Alistair C., Haldenby, Sam, Hill, Verity, Lucaci, Anita, McCrone, John T., Nicholls, Samuel M., O’Toole, Áine, Pacchiarini, Nicole, Poplawski, Radoslaw, Scher, Emily, Todd, Flora, Webster, Hermione J., Whitehead, Mark, Wierzbicki, Claudia, Loman, Nicholas J., Connor, Thomas R., Robertson, David L., Pybus, Oliver G., Rambaut, Andrew

Volltext

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK von du Plessis, Louis, McCrone, John T., Zarebski, Alexander E., Hill, Verity, Ruis, Christopher, Gutierrez, Bernardo, Raghwani, Jayna, Ashworth, Jordan, Colquhoun, Rachel, Connor, Thomas R., Faria, Nuno R., Jackson, Ben, Loman, Nicholas J., O'Toole, Aine, Nicholls, Samuel M., Parag, Kris, Scher, Emily, Vasylyeva, Tetyana, Volz, Erik M., Watts, Alexander, Bogoch, Isaac I., Khan, Kamran, Aanensen, David M., Kraemer, Moritz U. G., Rambaut, Andrew, Pybus, Oliver G.

Volltext

On the complexity of haplotyping a microbial community von Nicholls, Samuel M, Aubrey, Wayne, De Grave, Kurt, Schietgat, Leander, Creevey, Christopher J, Clare, Amanda

Volltext

Genomics-informed outbreak investigations of SARS-CoV-2 using civet von O'Toole, Áine, Hill, Verity, Jackson, Ben, Dewar, Rebecca, Sahadeo, Nikita, Colquhoun, Rachel, Rooke, Stefan, McCrone, J T, Duggan, Kate, McHugh, Martin P, Nicholls, Samuel M, Poplawski, Radoslaw, Aanensen, David, Holden, Matt, Connor, Tom, Loman, Nick, Goodfellow, Ian, Carrington, Christine V F, Templeton, Kate, Rambaut, Andrew

Volltext

Goldilocks: a tool for identifying genomic regions that are 'just right' von Nicholls, Samuel M, Clare, Amanda, Randall, Joshua C

Volltext

A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK von Colquhoun, Rachel, O’Toole, Áine, Hill, Verity, McCrone, J T, Yu, Xiaoyu, Nicholls, Samuel M, Poplawski, Radoslaw, Whalley, Thomas, Groves, Natalie, Ellaby, Nicholas, Loman, Nick, Connor, Tom, Rambaut, Andrew

Volltext

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package von Griffiths, Emma J, Timme, Ruth E, Mendes, Catarina Inês, Page, Andrew J, Alikhan, Nabil-Fareed, Fornika, Dan, Maguire, Finlay, Campos, Josefina, Park, Daniel, Olawoye, Idowu B, Oluniyi, Paul E, Anderson, Dominique, Christoffels, Alan, da Silva, Anders Gonçalves, Cameron, Rhiannon, Dooley, Damion, Katz, Lee S, Black, Allison, Karsch-Mizrachi, Ilene, Barrett, Tanya, Johnston, Anjanette, Connor, Thomas R, Nicholls, Samuel M, Witney, Adam A, Tyson, Gregory H, Tausch, Simon H, Raphenya, Amogelang R, Alcock, Brian, Aanensen, David M, Hodcroft, Emma, Hsiao, William W L, Vasconcelos, Ana Tereza R, MacCannell, Duncan R

Volltext

SARS-CoV-2 within-host diversity and transmission von Lythgoe, Katrina A, Hall, Matthew, Ferretti, Luca, de Cesare, Mariateresa, MacIntyre-Cockett, George, Trebes, Amy, Andersson, Monique, Otecko, Newton, Wise, Emma L, Moore, Nathan, Lynch, Jessica, Kidd, Stephen, Cortes, Nicholas, Mori, Matilde, Williams, Rebecca, Vernet, Gabrielle, Justice, Anita, Green, Angie, Nicholls, Samuel M, Ansari, M Azim, Abeler-Dörner, Lucie, Moore, Catrin E, Peto, Timothy EA, Eyre, David W, Shaw, Robert, Simmonds, Peter, Buck, David, Todd, John A, Oxford Virus Sequencing Analysis Group (OVSG), Connor, Thomas R, Ashraf, Shirin, da Silva Filipe, Ana, Shepherd, James, Thomson, Emma C, COVID-19 Genomics UK (COG-UK) Consortium, Bonsall, David, Fraser, Christophe, Golubchik, Tanya

Volltext

Evolution and epidemic spread of SARS-CoV-2 in Brazil von Candido, Darlan S, Claro, Ingra M, de Jesus, Jaqueline G, Souza, William M, Moreira, Filipe R.R, Dellicour, Simon, Mellan, Thomas A, du Plessis, Louis, Pereira, Rafael H.M, Sales, Flavia C.S, Manuli, Erika R, Theze, Julien, Almeida, Luiz, Menezes, Mariane T, Voloch, Carolina M, Fumagalli, Marcilio J, Coletti, Thais M, Silva, Camila A.M, Ramundo, Mariana S, Amorim, Mariene R, Hoeltgebaum, Henrique H, Mishra, Swapnil, Gill, Mandev S, Carvalho, Luiz M, Buss, Lewis F, Prete Jr, Carlos A, Ashworth, Jordan, Nakaya, Helder, Peixoto, Pedro S, Brady, Oliver J, Nicholls, Samuel M, Tanuri, Amilcar, Rossi, Atila D, Braga, Carlos K, Gerber, Alexandra L, Guimaraes, Ana Paula de C, Gaburo Jr, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C.S, Lima, Cristiano X, Levi, Jose Eduardo, Granato, Celso, Ferreira, Giulia M, Francisco Jr, Ronaldo S, Granja, Fabiana, Garcia, Marcia T, Moretti, Maria Luiza, Perroud Jr, Mauricio W, Castineiras, Terezinha M.P.P, Lazari, Carolina S, Hill, Sarah C, de Souza Santos, Andreza Aruska, Simeoni, Camila L, Forato, Julia, Sposito, Andrei C, Schreiber, Angelica Z, Santos, Magnun N.N, de Sa, Camila Zolini, Souza, Renan P, Resende-Moreira, Luciana C, Teixeira, Mauro M, Hubner, Josy, Leme, Patricia A.F, Moreira, Rennan G, Nogueira, Mauricio L, Ferguson, Neil M, Costa, Silvia F, Proenca-Modena, Jose Luiz, Vasconcelos, Ana Tereza R, Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J, Aguiar, Renato S, Pybus, Oliver G, Sabino, Ester C, Faria, Nuno Rodrigues

Volltext

Evolution and epidemic spread of SARS-CoV-2 in Brazil von Candido, Darlan S, Claro, Ingra M, de Jesus, Jaqueline G, Souza, William M, Moreira, Filipe RR, Dellicour, Simon, Mellan, Thomas A, du Plessis, Louis, Pereira, Rafael HM, Sales, Flavia CS, Manuli, Erika R, Thézé, Julien, Almeida, Luiz, Menezes, Mariane T, Voloch, Carolina M, Fumagalli, Marcilio J, Coletti, Thaís M, da Silva, Camila AM, Ramundo, Mariana S, Amorim, Mariene R, Hoeltgebaum, Henrique H, Mishra, Swapnil, Gill, Mandev S, Carvalho, Luiz M, Buss, Lewis F, Prete, Carlos A, Ashworth, Jordan, Nakaya, Helder I, Peixoto, Pedro S, Brady, Oliver J, Nicholls, Samuel M, Tanuri, Amilcar, Rossi, Átila D, Braga, Carlos KV, Gerber, Alexandra L, de C Guimarães, Ana Paula, Gaburo, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro CS, Lima, Cristiano X, Levi, José Eduardo, Granato, Celso, Ferreira, Giulia M, Francisco, Ronaldo S, Granja, Fabiana, Garcia, Marcia T, Moretti, Maria Luiza, Perroud, Mauricio W, Castiñeiras, Terezinha MPP, Lazari, Carolina S, Hill, Sarah C, de Souza Santos, Andreza Aruska, Simeoni, Camila L, Forato, Julia, Sposito, Andrei C, Schreiber, Angelica Z, Santos, Magnun NN, de Sá, Camila Zolini, Souza, Renan P, Resende-Moreira, Luciana C, Teixeira, Mauro M, Hubner, Josy, Leme, Patricia AF, Moreira, Rennan G, Nogueira, Maurício L, Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics an, Ferguson, Neil M, Costa, Silvia F, Proenca-Modena, José Luiz, Vasconcelos, Ana Tereza R, Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J, Aguiar, Renato S, Pybus, Oliver G, Sabino, Ester C, Faria, Nuno Rodrigues

Volltext

Genomics-informed outbreak investigations of SARS-CoV-2 using civet von Áine O’Toole, Verity Hill, Ben Jackson, Rebecca Dewar, Nikita Sahadeo, Rachel Colquhoun, Stefan Rooke, J. T. McCrone, Kate Duggan, Martin P. McHugh, Samuel M. Nicholls, Radoslaw Poplawski, David Aanensen, Matt Holden, Tom Connor, Nick Loman, Ian Goodfellow, Christine V. F. Carrington, Kate Templeton, Andrew Rambaut

Volltext

Genomics-informed outbreak investigations of SARS-CoV-2 using civet von O'Toole, Áine, Hill, Verity, Jackson, Ben, Dewar, Rebecca, Sahadeo, Nikita, Colquhoun, Rachel, Rooke, Stefan, McCrone, JT, Duggan, Kate, McHugh, Martin P, Nicholls, Samuel M, Poplawski, Radoslaw, COVID-19 Genomics UK (COG-UK) Consortium, COVID-19 Impact Project (Trinidad & Tobago Group), Aanensen, David, Holden, Matt, Connor, Tom, Loman, Nick, Goodfellow, Ian, Carrington, Christine VF, Templeton, Kate, Rambaut, Andrew

Volltext bestellen

Genomics-informed outbreak investigations of SARS-CoV-2 using civet von O'Toole, Áine, Hill, Verity, Jackson, Ben, Dewar, Rebecca, Sahadeo, Nikita, Colquhoun, Rachel, Rooke, Stefan, McCrone, JT, Duggan, Kate, McHugh, Martin P, Nicholls, Samuel M, Poplawski, Radoslaw, COVID-19 Genomics UK (COG-UK) Consortium, COVID-19 Impact Project (Trinidad & Tobago Group), Aanensen, David, Holden, Matt, Connor, Tom, Loman, Nick, Goodfellow, Ian, Carrington, Christine VF, Templeton, Kate, Rambaut, Andrew

Volltext bestellen

CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance von Nicholls, Samuel M, Poplawski, Radoslaw, Bull, Matthew J, Underwood, Anthony, Chapman, Michael, Abu-Dahab, Khalil, Taylor, Ben, Colquhoun, Rachel M, Rowe, Will PM, Jackson, Ben, Hill, Verity, O’Toole, Áine, Rey, Sara, Southgate, Joel, Amato, Roberto, Livett, Rich, Gonçalves, Sónia, Harrison, Ewan M, Peacock, Sharon J, Aanensen, David M, Rambaut, Andrew, Connor, Thomas R, Loman, Nicholas J, The COVID-19 Genomics UK (COG-UK) Consortium

Volltext bestellen

Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic von Jackson, Ben, Boni, Maciej F, Bull, Matthew J, Colleran, Amy, Colquhoun, Rachel M, Darby, Alistair C, Haldenby, Sam, Hill, Verity, Lucaci, Anita, McCrone, John T, Nicholls, Samuel M, O'Toole, Áine, Pacchiarini, Nicole, Poplawski, Radoslaw, Scher, Emily, Todd, Flora, Webster, Hermione J, Whitehead, Mark, Wierzbicki, Claudia, COVID-19 Genomics UK (COG-UK) Consortium, Loman, Nicholas J, Connor, Thomas R, Robertson, David L, Pybus, Oliver G, Rambaut, Andrew

Volltext bestellen

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity von Volz, Erik, Hill, Verity, McCrone, John T, Price, Anna, Jorgensen, David, O'Toole, Áine, Southgate, Joel, Johnson, Robert, Jackson, Ben, Nascimento, Fabricia F, Rey, Sara M, Nicholls, Samuel M, Colquhoun, Rachel M, da Silva Filipe, Ana, Shepherd, James, Pascall, David J, Shah, Rajiv, Jesudason, Natasha, Li, Kathy, Jarrett, Ruth, Pacchiarini, Nicole, Bull, Matthew, Geidelberg, Lily, Siveroni, Igor, COG-UK Consortium, Goodfellow, Ian, Loman, Nicholas J, Pybus, Oliver G, Robertson, David L, Thomson, Emma C, Rambaut, Andrew, Connor, Thomas R

Volltext bestellen

SARS-CoV-2 within-host diversity and transmission von Lythgoe, Katrina A, Hall, Matthew, Ferretti, Luca, de Cesare, Mariateresa, MacIntyre-Cockett, George, Trebes, Amy, Andersson, Monique, Otecko, Newton, Wise, Emma L, Moore, Nathan, Lynch, Jessica, Kidd, Stephen, Cortes, Nicholas, Mori, Matilde, Williams, Rebecca, Vernet, Gabrielle, Justice, Anita, Green, Angie, Nicholls, Samuel M, Ansari, M Azim, Abeler-Dörner, Lucie, Moore, Catrin E, Peto, Timothy EA, Eyre, David W, Shaw, Robert, Simmonds, Peter, Buck, David, Todd, John A, Oxford Virus Sequencing Analysis Group (OVSG), Connor, Thomas R, Ashraf, Shirin, da Silva Filipe, Ana, Shepherd, James, Thomson, Emma C, COVID-19 Genomics UK (COG-UK) Consortium, Bonsall, David, Fraser, Christophe, Golubchik, Tanya

Volltext bestellen