DNA methylation as a genomic marker of exposure to chemical and environmental agents von Meehan, Richard R, Thomson, John P, Lentini, Antonio, Nestor, Colm E, Pennings, Sari

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Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes von Nestor, Colm E, Ottaviano, Raffaele, Reddington, James, Sproul, Duncan, Reinhardt, Diana, Dunican, Donncha, Katz, Elad, Dixon, J Michael, Harrison, David J, Meehan, Richard R

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Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes von Reddington, James P, Perricone, Sara M, Nestor, Colm E, Reichmann, Judith, Youngson, Neil A, Suzuki, Masako, Reinhardt, Diana, Dunican, Donncha S, Prendergast, James G, Mjoseng, Heidi, Ramsahoye, Bernard H, Whitelaw, Emma, Greally, John M, Adams, Ian R, Bickmore, Wendy A, Meehan, Richard R

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DNA methylation changes separate allergic patients from healthy controls and may reflect altered CD4+ T-cell population structure von Nestor, Colm E, Barrenäs, Fredrik, Wang, Hui, Lentini, Antonio, Zhang, Huan, Bruhn, Sören, Jörnsten, Rebecka, Langston, Michael A, Rogers, Gary, Gustafsson, Mika, Benson, Mikael

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Progesterone Inhibits the Establishment of Activation-Associated Chromatin During TH1 Differentiation von Rundquist, Olof, Nestor, Colm E., Jenmalm, Maria C., Hellberg, Sandra, Gustafsson, Mika

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Dynamic Response Genes in CD4+ T Cells Reveal a Network of Interactive Proteins that Classifies Disease Activity in Multiple Sclerosis von Hellberg, Sandra, Eklund, Daniel, Gawel, Danuta R., Köpsén, Mattias, Zhang, Huan, Nestor, Colm E., Kockum, Ingrid, Olsson, Tomas, Skogh, Thomas, Kastbom, Alf, Sjöwall, Christopher, Vrethem, Magnus, Håkansson, Irene, Benson, Mikael, Jenmalm, Maria C., Gustafsson, Mika, Ernerudh, Jan

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TCF/LEF dependent and independent transcriptional regulation of Wnt/β‐catenin target genes von Doumpas, Nikolaos, Lampart, Franziska, Robinson, Mark D, Lentini, Antonio, Nestor, Colm E, Cantù, Claudio, Basler, Konrad

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5-Hydroxymethylcytosine Remodeling Precedes Lineage Specification during Differentiation of Human CD4+ T Cells von Nestor, Colm E., Lentini, Antonio, Hägg Nilsson, Cathrine, Gawel, Danuta R., Gustafsson, Mika, Mattson, Lina, Wang, Hui, Rundquist, Olof, Meehan, Richard R., Klocke, Bernward, Seifert, Martin, Hauck, Stefanie M., Laumen, Helmut, Zhang, Huan, Benson, Mikael

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A validated gene regulatory network and GWAS identifies early regulators of T cell-associated diseases von Gustafsson, Mika, Gawel, Danuta, Alfredsson, Lars, Baranzini, Sergio, Bjorkander, Janne, Blomgran, Robert, Hellberg, Sandra, Eklund, Daniel, Ernerudh, Jan, Kockum, Ingrid, Konstantinell, Aelita, Lahesmaa, Riita, Lentini, Antonio, Liljenström, H. Robert I., Mattson, Lina, Matussek, Andreas, Mellergård, Johan, Mendez, Melissa, Olsson, Tomas, Pujana, Miguel A., Rasool, Omid, Serra-Musach, Jordi, Stenmarker, Margaretha, Tripathi, Subhash, Viitala, Miro, Wang, Hui, Zhang, Huan, Nestor, Colm, Benson, Mikael

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DNA methylation in infants with low and high body fatness von Henriksson, Pontus, Lentini, Antonio, Altmaee, Signe, Brodin, David, Mueller, Patrick, Forsum, Elisabet, Nestor, Colm E., Lof, Marie

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CD4+ T-cell DNA methylation changes during pregnancy significantly correlate with disease-associated methylation changes in autoimmune diseases von Badam, Tejaswi V., Hellberg, Sandra, Mehta, Ratnesh B., Lechner-Scott, Jeannette, Lea, Rodney A., Tost, Jorg, Mariette, Xavier, Svensson-Arvelund, Judit, Nestor, Colm E., Benson, Mikael, Berg, Göran, Jenmalm, Maria C., Gustafsson, Mika, Ernerudh, Jan

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Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns von Sproul, Duncan, Kitchen, Robert R, Nestor, Colm E, Dixon, J Michael, Sims, Andrew H, Harrison, David J, Ramsahoye, Bernard H, Meehan, Richard R

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Correlation of inter-locus polyglutamine toxicity with CAG•CTG triplet repeat expandability and flanking genomic DNA GC content von Nestor, Colm E, Monckton, Darren G

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TET2 as a tumor suppressor and therapeutic target in T-cell acute lymphoblastic leukemia von Bensberg, Maike, Rundquist, Olof, Selimović, Aida, Lagerwall, Cathrine, Benson, Mikael, Gustafsson, Mika, Vogt, Hartmut, Lentini, Antonio, Nestor, Colm E.

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LASSIM-A network inference toolbox for genome-wide mechanistic modeling von Magnusson, Rasmus, Mariotti, Guido Pio, Köpsén, Mattias, Lövfors, William, Gawel, Danuta R, Jörnsten, Rebecka, Linde, Jörg, Nordling, Torbjörn E M, Nyman, Elin, Schulze, Sylvie, Nestor, Colm E, Zhang, Huan, Cedersund, Gunnar, Benson, Mikael, Tjärnberg, Andreas, Gustafsson, Mika

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Mapping DNA Methylation in Mammals: The State of the Art von Lentini, Antonio, Nestor, Colm E.

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Analyzing DNA-Immunoprecipitation Sequencing Data von Lentini, Antonio, Nestor, Colm E.

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RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers... von Magnusson, Rasmus, Rundquist, Olof, Kim, Min Jung, Hellberg, Sandra, Benson, Mikael, Gomez-Cabrero, David, Kockum, Ingrid, Tegnér, Jesper N., Piehl, Fredrik, Jagodic, Maja, Mellergård, Johan, Altafini, Claudio, Ernerudh, Jan, Jenmalm, Maria C., Nestor, Colm E., Kim, Min-Sik, Gustafsson, Mika

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Rapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems von Nestor, Colm E, Ottaviano, Raffaele, Reinhardt, Diana, Cruickshanks, Hazel A, Mjoseng, Heidi K, McPherson, Rhoanne C, Lentini, Antonio, Thomson, John P, Dunican, Donncha S, Pennings, Sari, Anderton, Stephen M, Benson, Mikael, Meehan, Richard R

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Promoter DNA methylation couples genome-defence mechanisms to epigenetic reprogramming in the mouse germline von Hackett, Jamie A, Reddington, James P, Nestor, Colm E, Dunican, Donncha S, Branco, Miguel R, Reichmann, Judith, Reik, Wolf, Surani, M Azim, Adams, Ian R, Meehan, Richard R

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