Rapid Targeted Genomics in Critically Ill Newborns von van Diemen, Cleo C, Kerstjens-Frederikse, Wilhelmina S, Bergman, Klasien A, de Koning, Tom J, Sikkema-Raddatz, Birgit, van der Velde, Joeri K, Abbott, Kristin M, Herkert, Johanna C, Löhner, Katharina, Rump, Patrick, Meems-Veldhuis, Martine T, Neerincx, Pieter B T, Jongbloed, Jan D H, van Ravenswaaij-Arts, Conny M, Swertz, Morris A, Sinke, Richard J, van Langen, Irene M, Wijmenga, Cisca

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Using R in Taverna: RShell v1.2 von Wassink, I, Rauwerda, H, Neerincx, P.B.T, Vet, P.E. van der, Breit, T.M, Leunissen, J.A.M, Nijholt, A

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Negative selection in humans and fruit flies involves synergistic epistasis von Sohail, Mashaal, Vakhrusheva, Olga A., Sul, Jae Hoon, Pulit, Sara L., Francioli, Laurent C., van den Berg, Leonard H., Veldink, Jan H., de Bakker, Paul I. W., Bazykin, Georgii A., Kondrashov, Alexey S., Sunyaev, Shamil R.

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Gene Expression in Chicken Reveals Correlation with Structural Genomic Features and Conserved Patterns of Transcription in the Terrestrial Vertebrates von Nie, H, Crooijmans, R.P.M.A, Lammers, A, Schothorst, E.M. van, Keijer, J, Neerincx, P, Leunissen, J.A.M, Megens, H.J.W.C, Groenen, M.A.M

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A framework for the detection of de novo mutations in family-based sequencing data von Francioli, Laurent C, Cretu-Stancu, Mircea, Garimella, Kiran V, Fromer, Menachem, Kloosterman, Wigard P, Samocha, Kaitlin E, Neale, Benjamin M, Daly, Mark J, Banks, Eric, DePristo, Mark A, de Bakker, Paul Iw

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OligoRAP – an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity von Neerincx, P, Rauwerda, H, Nie, H, Groenen, M.A.M, Breit, T.M, Leunissen, J.A.M

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Microarray data mining using Bioconductor packages von Nie, H, Neerincx, P, Poel, J.J. van der, Ferrari, F, Bicciato, S, Leunissen, J.A.M, Groenen, M.A.M

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Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis von Neerincx, P.B.T, Casel, P, Prickett, D, Nie, H, Watson, M, Leunissen, J.A.M, Groenen, M.A.M, Klopp, Ch

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Microarray data mining using Bioconductor packages von Nie, Haisheng, Neerincx, Pieter BT, Poel, Jan van der, Ferrari, Francesco, Bicciato, Silvio, Leunissen, Jack AM, Groenen, Martien AM

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Methods for interpreting lists of affected genes obtained in a DNA microarray experiment von Hedegaard, Jakob, Arce, Cristina, Bicciato, Silvio, Bonnet, Agnès, Buitenhuis, Bart, Collado-Romero, Melania, Conley, Lene N, SanCristobal, Magali, Ferrari, Francesco, Garrido, Juan J, Groenen, Martien Am, Hornshøj, Henrik, Hulsegge, Ina, Jiang, Li, Jiménez-Marín, Ángeles, Kommadath, Arun, Lagarrigue, Sandrine, Leunissen, Jack Am, Liaubet, Laurence, Neerincx, Pieter Bt, Nie, Haisheng, Poel, Jan van der, Prickett, Dennis, Ramirez-Boo, María, Rebel, Johanna Mj, Robert-Granié, Christèle, Skarman, Axel, Smits, Mari A, Sørensen, Peter, Tosser-Klopp, Gwenola, Watson, Michael

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A framework for the detection of de novo mutations in family-based sequencing data von Francioli, Laurent C, Cretu-Stancu, Mircea, Garimella, Kiran V, Fromer, Menachem, Kloosterman, Wigard P, Wijmenga, Cisca, Investigator, Principal, Swertz, Morris A, van Duijn, Cornelia M, Boomsma, Dorret I, Slagboom, PEline, van Ommen, Gertjan B, de Bakker, Paul IW, van Dijk, Freerk, Menelaou, Androniki, Neerincx, Pieter BT, Pulit, Sara L, Deelen, Patrick, Elbers, Clara C, Francesco Palamara, Pier, Pe'er, Itsik, Abdellaoui, Abdel, van Oven, Mannis, Vermaat, Martijn, Li, Mingkun, Laros, Jeroen FJ, Stoneking, Mark, de Knijff, Peter, Kayser, Manfred, Veldink, Jan H, van den Berg, Leonard H, Byelas, Heorhiy, den Dunnen, Johan T, Dijkstra, Martijn, Amin, Najaf, van der Velde, K Joeri, Hottenga, Jouke Jan, van Setten, Jessica, van Leeuwen, Elisabeth M, Kanterakis, Alexandros, Kattenberg, Mathijs, Karssen, Lennart C, van Schaik, Barbera DC, Bot, Jan, Nijman, Isaäc J, Renkens, Ivo, van Enckevort, David, Mei, Hailiang, Koval, Vyacheslav, Estrada, Karol, Medina-Gomez, Carolina, Ye, Kai, Lameijer, Eric-Wubbo, Moed, Matthijs H, Hehir-Kwa, Jayne Y, Handsaker, Robert E, McCarroll, Steven A, Sunyaev, Shamil R, Polak, Paz, Vuzman, Dana, Sohail, Mashaal, Hormozdiari, Fereydoun, Marschall, Tobias, Schönhuth, Alexander, Guryev, Victor, Slagboom, P Eline, Beekman, Marian B, de Craen, Anton JM, Suchiman, H Eka D, Hofman, Albert, Oostra, Ben, Isaacs, Aaron, Rivadeneira, Fernando, Uitterlinden, André G, Willemsen, Gonneke, Platteel, Mathieu, Pitts, Steven J, Potluri, Shobha, Sundar, Purnima, Cox, David R, Li, Qibin, Li, Yingrui, Du, Yuanping, Chen, Ruoyan, Cao, Hongzhi, Li, Ning, Cao, Sujie, Wang, Jun, Bovenberg, Jasper A, Brandsma, Margreet, Samocha, Kaitlin E, Neale, Benjamin M, Daly, Mark J, Banks, Eric, DePristo, Mark A

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