Genomic discovery of potent chromatin insulators for human gene therapy von Liu, Mingdong, Maurano, Matthew T, Wang, Hao, Qi, Heyuan, Song, Chao-Zhong, Navas, Patrick A, Emery, David W, Stamatoyannopoulos, John A, Stamatoyannopoulos, George

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Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays von Sabo, Peter J, Kuehn, Michael S, Thurman, Robert, Johnson, Brett E, Johnson, Ericka M, Cao, Hua, Yu, Man, Rosenzweig, Elizabeth, Goldy, Jeff, Haydock, Andrew, Weaver, Molly, Shafer, Anthony, Lee, Kristin, Neri, Fidencio, Humbert, Richard, Singer, Michael A, Richmond, Todd A, Dorschner, Michael O, McArthur, Michael, Hawrylycz, Michael, Green, Roland D, Navas, Patrick A, Noble, William S, Stamatoyannopoulos, John A

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The accessible chromatin landscape of the human genome von Thurman, Robert E., Rynes, Eric, Humbert, Richard, Vierstra, Jeff, Maurano, Matthew T., Haugen, Eric, Sheffield, Nathan C., Stergachis, Andrew B., Wang, Hao, Vernot, Benjamin, Garg, Kavita, John, Sam, Sandstrom, Richard, Bates, Daniel, Boatman, Lisa, Canfield, Theresa K., Diegel, Morgan, Dunn, Douglas, Ebersol, Abigail K., Frum, Tristan, Giste, Erika, Johnson, Audra K., Johnson, Ericka M., Kutyavin, Tanya, Lajoie, Bryan, Lee, Bum-Kyu, Lee, Kristen, London, Darin, Lotakis, Dimitra, Neph, Shane, Neri, Fidencio, Nguyen, Eric D., Qu, Hongzhu, Reynolds, Alex P., Roach, Vaughn, Safi, Alexias, Sanchez, Minerva E., Sanyal, Amartya, Shafer, Anthony, Simon, Jeremy M., Song, Lingyun, Vong, Shinny, Weaver, Molly, Yan, Yongqi, Zhang, Zhancheng, Zhang, Zhuzhu, Lenhard, Boris, Tewari, Muneesh, Dorschner, Michael O., Hansen, R. Scott, Navas, Patrick A., Stamatoyannopoulos, George, Iyer, Vishwanath R., Lieb, Jason D., Sunyaev, Shamil R., Akey, Joshua M., Sabo, Peter J., Kaul, Rajinder, Furey, Terrence S., Dekker, Job, Crawford, Gregory E., Stamatoyannopoulos, John A.

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Genetic origins of the Minoans and Mycenaeans von Lazaridis, Iosif, Mittnik, Alissa, Patterson, Nick, Mallick, Swapan, Rohland, Nadin, Pfrengle, Saskia, Furtwängler, Anja, Peltzer, Alexander, Posth, Cosimo, Vasilakis, Andonis, McGeorge, P. J. P., Konsolaki-Yannopoulou, Eleni, Korres, George, Martlew, Holley, Michalodimitrakis, Manolis, Özsait, Mehmet, Özsait, Nesrin, Papathanasiou, Anastasia, Richards, Michael, Roodenberg, Songül Alpaslan, Tzedakis, Yannis, Arnott, Robert, Fernandes, Daniel M., Hughey, Jeffery R., Lotakis, Dimitra M., Navas, Patrick A., Maniatis, Yannis, Stamatoyannopoulos, John A., Stewardson, Kristin, Stockhammer, Philipp, Pinhasi, Ron, Reich, David, Krause, Johannes, Stamatoyannopoulos, George

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A European population in Minoan Bronze Age Crete von Hughey, Jeffery R., Paschou, Peristera, Drineas, Petros, Mastropaolo, Donald, Lotakis, Dimitra M., Navas, Patrick A., Michalodimitrakis, Manolis, Stamatoyannopoulos, John A., Stamatoyannopoulos, George

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Genome Architecture of the Human β-Globin Locus Affects Developmental Regulation of Gene Expression von Harju, Susanna, Navas, Patrick A., Stamatoyannopoulos, George, Peterson, Kenneth R.

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γ-Globin Gene Expression in Chemical Inducer of Dimerization (CID)-dependent Multipotential Cells Established from Human β-Globin Locus Yeast Artificial Chromosome (β-YAC) Transgen... von Blau, C. Anthony, Barbas, Carlos F., Bomhoff, Anna L., Neades, Renee, Yan, James, Navas, Patrick A., Peterson, Kenneth R.

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Synergistic and Additive Properties of the Beta-Globin Locus Control Region (LCR) Revealed by 5′HS3 Deletion Mutations: Implication for LCR Chromatin Architecture von Fang, Xiangdong, Sun, Jin, Xiang, Ping, Yu, Man, Navas, Patrick A., Peterson, Kenneth R., Stamatoyannopoulos, George, Li, Qiliang

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A user's guide to the encyclopedia of DNA elements (ENCODE) von Consortium, The ENCODEProject

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project von Birney, Ewan, Stamatoyannopoulos, John A, Dutta, Anindya, Guigó, Roderic, Gingeras, Thomas R, Margulies, Elliott H, Weng, Zhiping, Snyder, Michael, Dermitzakis, Emmanouil T, Thurman, Robert E, Kuehn, Michael S, Taylor, Christopher M, Neph, Shane, Koch, Christoph M, Asthana, Saurabh, Malhotra, Ankit, Adzhubei, Ivan, Greenbaum, Jason A, Andrews, Robert M, Flicek, Paul, Boyle, Patrick J, Cao, Hua, Carter, Nigel P, Clelland, Gayle K, Davis, Sean, Day, Nathan, Dhami, Pawandeep, Dillon, Shane C, Dorschner, Michael O, Fiegler, Heike, Giresi, Paul G, Goldy, Jeff, Hawrylycz, Michael, Haydock, Andrew, Humbert, Richard, James, Keith D, Johnson, Brett E, Johnson, Ericka M, Frum, Tristan T, Rosenzweig, Elizabeth R, Karnani, Neerja, Lee, Kirsten, Lefebvre, Gregory C, Navas, Patrick A, Neri, Fidencio, Parker, Stephen C J, Sabo, Peter J, Sandstrom, Richard, Shafer, Anthony, Vetrie, David, Weaver, Molly, Wilcox, Sarah, Yu, Man, Collins, Francis S, Dekker, Job, Lieb, Jason D, Tullius, Thomas D, Crawford, Gregory E, Sunyaev, Shamil, Noble, William S, Dunham, Ian, Denoeud, France, Reymond, Alexandre, Kapranov, Philipp, Rozowsky, Joel, Zheng, Deyou, Castelo, Robert, Frankish, Adam, Harrow, Jennifer, Ghosh, Srinka, Sandelin, Albin, Hofacker, Ivo L, Baertsch, Robert, Keefe, Damian, Dike, Sujit, Cheng, Jill, Hirsch, Heather A, Sekinger, Edward A, Lagarde, Julien, Abril, Josep F, Shahab, Atif, Flamm, Christoph, Fried, Claudia, Hackermüller, Jörg, Hertel, Jana, Lindemeyer, Manja, Missal, Kristin, Tanzer, Andrea, Washietl, Stefan, Korbel, Jan, Emanuelsson, Olof, Pedersen, Jakob S, Holroyd, Nancy, Taylor, Ruth, Swarbreck, David, Matthews, Nicholas, Dickson, Mark C, Thomas, Daryl J, Weirauch, Matthew T, Gilbert, James

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Investigations of a Human Embryonic Globin Gene Silencing Element Using YAC Transgenic Mice von Navas, Patrick A., Li, Qiliang, Peterson, Kenneth R., Stamatoyannopoulos, George

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Developmental Specificity of the Interaction between the Locus Control Region and Embryonic or Fetal Globin Genes in Transgenic Mice with an HS3 Core Deletion von Navas, Patrick A., Peterson, Kenneth R., Li, Qiliang, Skarpidi, Eva, Rohde, Alex, Shaw, Sara E., Clegg, Christopher H., Asano, Haruhiko, Stamatoyannopoulos, George

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Activation of the β-like globin genes in transgenic mice is dependent on the presence of the β-locus control region von Navas, Patrick A., Li, Qiliang, Peterson, Kenneth R., Swank, Richard A., Rohde, Alex, Roy, Julianne, Stamatoyannopoulos, George

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Mutation of a transcriptional motif of a distant regulatory element reduces the expression of embryonic and fetal globin genes von Navas, Patrick A., Swank, Richard A., Yu, Man, Peterson, Kenneth R., Stamatoyannopoulos, George

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Talen-Mediated Knock Outs Of Cis and Trans Elements Potentially Involved In Globin Gene Switching von Navas, Patrick A, Yan, Yongqi, Sanchez, Minerva E, Johnson, Ericka M, Stamatoyannopoulos, George

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The accessible chromatin landscape of the human genome von Thurman, Robert E, Rynes, Eric, Humbert, Richard, Vierstra, Jeff, Maurano, Matthew T, Haugen, Eric, Sheffield, Nathan C, Stergachis, Andrew B, Wang, Hao, Vernot, Benjamin, Garg, Kavita, Sandstrom, Richard, Bates, Daniel, Canfield, Theresa K, Diegel, Morgan, Dunn, Douglas, Ebersol, Abigail K, Frum, Tristan, Giste, Erika, Harding, Lisa, Johnson, Audra K, Johnson, Ericka M, Kutyavin, Tanya, Lajoie, Bryan, Lee, Bum-Kyu, Lee, Kristen, London, Darin, Lotakis, Dimitra, Neph, Shane, Neri, Fidencio, Nguyen, Eric D, Reynolds, Alex P, Roach, Vaughn, Safi, Alexias, Sanchez, Minerva E, Sanyal, Amartya, Shafer, Anthony, Simon, Jeremy M, Song, Lingyun, Vong, Shinny, Weaver, Molly, Zhang, Zhancheng, Zhang, Zhuzhu, Lenhard, Boris, Tewari, Muneesh, Dorschner, Michael O, Hansen, R. Scott, Navas, Patrick A, Stamatoyannopoulos, George, Iyer, Vishwanath R, Lieb, Jason D, Sunyaev, Shamil R, Akey, Joshua M, Sabo, Peter J, Kaul, Rajinder, Furey, Terrence S, Dekker, Job, Crawford, Gregory E, Stamatoyannopoulos, John A

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Effect of Deletion of 5′HS3 or 5′HS2 of the Human β -Globin Locus Control Region on the Developmental Regulation of Globin Gene Expression in β -Globin Locus Yeast Artificial Chrom... von Peterson, Kenneth R., Clegg, Christopher H., Navas, Patrick A., Norton, Elizabeth J., Kimbrough, Tyler G., Stamatoyannopoulos, George

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Effect of deletion of 5'HS3 or 5'HS2 of the human beta-globin locus control region on the developmental regulation of globin gene expression in beta-globin locus yeast artificial c... von Peterson, K R, Clegg, C H, Navas, P A, Norton, E J, Kimbrough, T G, Stamatoyannopoulos, G

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γ-Globin Gene Expression in Chemical Inducer of Dimerization (CID)-dependent Multipotential Cells Established from Human β-Globin Locus Yeast Artificial Chromosome (β-YAC) Trans... von C. Anthony Blau, Carlos F. Barbas III, Anna L. Bomhoff, Renee Neades, James Yan, Patrick A. Navas, Kenneth R. Peterson

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Long-Range Enhancement of β-Globin Gene Expression Is Dependent on Gt Motifs Residing in the HS3 Core Element of the Locus Control Region von Navas, Patrick A., Stergachis, Andrew B., Sheffer, Hadar H., Ye, Xin, Stafford, Mary, Stamatoyannopoulos, George

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