Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells von Buettner, Florian, Natarajan, Kedar N, Casale, F Paolo, Proserpio, Valentina, Scialdone, Antonio, Theis, Fabian J, Teichmann, Sarah A, Marioni, John C, Stegle, Oliver

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Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation von Kolodziejczyk, Aleksandra A., Kim, Jong Kyoung, Tsang, Jason C.H., Ilicic, Tomislav, Henriksson, Johan, Natarajan, Kedar N., Tuck, Alex C., Gao, Xuefei, Bühler, Marc, Liu, Pentao, Marioni, John C., Teichmann, Sarah A.

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Computational assignment of cell-cycle stage from single-cell transcriptome data von Scialdone, Antonio, Natarajan, Kedar N., Saraiva, Luis R., Proserpio, Valentina, Teichmann, Sarah A., Stegle, Oliver, Marioni, John C., Buettner, Florian

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TENET: gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data von Kim, Junil, T. Jakobsen, Simon, Natarajan, Kedar N, Won, Kyoung-Jae

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Transcriptional Dynamics of Hepatic Sinusoid‐Associated Cells After Liver Injury von Terkelsen, Mike K., Bendixen, Sofie M., Hansen, Daniel, Scott, Emma A.H., Moeller, Andreas F., Nielsen, Ronni, Mandrup, Susanne, Schlosser, Anders, Andersen, Thomas L., Sorensen, Grith L., Krag, Aleksander, Natarajan, Kedar N., Detlefsen, Sönke, Dimke, Henrik, Ravnskjaer, Kim

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Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition von Oatley, Morgan, Bölükbası, Özge Vargel, Svensson, Valentine, Shvartsman, Maya, Ganter, Kerstin, Zirngibl, Katharina, Pavlovich, Polina V., Milchevskaya, Vladislava, Foteva, Vladimira, Natarajan, Kedar N., Baying, Bianka, Benes, Vladimir, Patil, Kiran R., Teichmann, Sarah A., Lancrin, Christophe

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Exploration of cell state heterogeneity using single-cell proteomics through sensitivity-tailored data-independent acquisition von Petrosius, Valdemaras, Aragon-Fernandez, Pedro, Üresin, Nil, Kovacs, Gergo, Phlairaharn, Teeradon, Furtwängler, Benjamin, Op De Beeck, Jeff, Skovbakke, Sarah L., Goletz, Steffen, Thomsen, Simon Francis, Keller, Ulrich auf dem, Natarajan, Kedar N., Porse, Bo T., Schoof, Erwin M.

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SC3: consensus clustering of single-cell RNA-seq data von Kiselev, Vladimir Yu, Kirschner, Kristina, Schaub, Michael T, Andrews, Tallulah, Yiu, Andrew, Chandra, Tamir, Natarajan, Kedar N, Reik, Wolf, Barahona, Mauricio, Green, Anthony R, Hemberg, Martin

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CRISPR-Cas12a-integrated transgenes in genomic safe harbors retain high expression in human hematopoietic iPSC-derived lineages and primary cells von Vlassis, Arsenios, Jensen, Tanja L., Mohr, Marina, Jedrzejczyk, Dominika J., Meng, Xiangyou, Kovacs, Gergo, Morera-Gómez, Martí, Barghetti, Andrea, Muyo Abad, Sergi, Baumgartner, Roland F., Natarajan, Kedar N., Nielsen, Lars K., Warnecke, Tanya, Gill, Ryan T.

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The systems biology format converter von Rodriguez, Nicolas, Pettit, Jean-Baptiste, Dalle Pezze, Piero, Li, Lu, Henry, Arnaud, van Iersel, Martijn P, Jalowicki, Gael, Kutmon, Martina, Natarajan, Kedar N, Tolnay, David, Stefan, Melanie I, Evelo, Chris T, Le Novère, Nicolas

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Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition von Oatley, Morgan, Bölükbası, Özge Vargel, Svensson, Valentine, Shvartsman, Maya, Ganter, Kerstin, Zirngibl, Katharina, Pavlovich, Polina V, Milchevskaya, Vladislava, Foteva, Vladimira, Natarajan, Kedar N, Baying, Bianka, Benes, Vladimir, Patil, Kiran R, Teichmann, Sarah A, Lancrin, Christophe

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Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation von Pramanik, Jhuma, Chen, Xi, Kar, Gozde, Henriksson, Johan, Gomes, Tomás, Park, Jong-Eun, Natarajan, Kedar, Meyer, Kerstin B, Miao, Zhichao, McKenzie, Andrew N J, Mahata, Bidesh, Teichmann, Sarah A

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The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle von Howick, Virginia M, Russell, Andrew J C, Andrews, Tallulah, Heaton, Haynes, Reid, Adam J, Natarajan, Kedar, Butungi, Hellen, Metcalf, Tom, Verzier, Lisa H, Rayner, Julian C, Berriman, Matthew, Herren, Jeremy K, Billker, Oliver, Hemberg, Martin, Talman, Arthur M, Lawniczak, Mara K N

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Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation von Proserpio, Valentina, Piccolo, Andrea, Haim-Vilmovsky, Liora, Kar, Gozde, Lönnberg, Tapio, Svensson, Valentine, Pramanik, Jhuma, Natarajan, Kedar Nath, Zhai, Weichao, Zhang, Xiuwei, Donati, Giacomo, Kayikci, Melis, Kotar, Jurij, McKenzie, Andrew N J, Montandon, Ruddy, Billker, Oliver, Woodhouse, Steven, Cicuta, Pietro, Nicodemi, Mario, Teichmann, Sarah A

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Erratum to: Single cell analysis of CD4+ T cell differentiation reveals three major cell states and progressive acceleration of proliferation von Proserpio, Valentina, Piccolo, Andrea, Haim-Vilmovsky, Liora, Kar, Gozde, Lönnberg, Tapio, Svensson, Valentine, Pramanik, Jhuma, Natarajan, Kedar Nath, Zhai, Weichao, Zhang, Xiuwei, Donati, Giacomo, Kayikci, Melis, Kotar, Jurij, McKenzie, Andrew N J, Montandon, Ruddy, James, Kylie R, Fernandez-Ruiz, Daniel, Heath, William R, Haque, Ashraful, Billker, Oliver, Woodhouse, Steven, Cicuta, Pietro, Nicodemi, Mario, Teichmann, Sarah A

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Wind Power Forecasting Using Parallel Random Forest Algorithm von Natarajan, V. Anantha, Kumari, N. Sandhya

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Learned Invariant Feature Transform and Extreme Learning Machines for Face Recognition von Vinay, A., S. Hegde, Nishanth, Tejas, S. K., Patil, Naveen V., Natarajan, S., Balasubramanya Murthy, K. N.

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Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation von Pramanik, Jhuma, Chen, Xi, Kar, Gozde, Henriksson, Johan, Gomes, Tomás, Park, Jong-Eun, Natarajan, Kedar, Meyer, Kerstin B, Miao, Zhichao, McKenzie, Andrew NJ, Mahata, Bidesh, Teichmann, Sarah A

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Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation von Pramanik, Jhuma, Chen, Xi, Kar, Gozde, Henriksson, Johan, Gomes, Tomás, Park, Jong-Eun, Natarajan, Kedar, Meyer, Kerstin B, Miao, Zhichao, McKenzie, Andrew N J, Mahata, Bidesh, Teichmann, Sarah A

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Erratum to: Single cell analysis of CD4+ T cell differentiation reveals three major cell states and progressive acceleration of proliferation von Proserpio, Valentina, Piccolo, Andrea, Haim-Vilmovsky, Liora, Kar, Gozde, Lönnberg, Tapio, Svensson, Valentine, Pramanik, Jhuma, Natarajan, Kedar Nath, Zhai, Weichao, Zhang, Xiuwei, Donati, Giacomo, Kayikci, Melis, Kotar, Jurij, McKenzie, Andrew NJ, Montandon, Ruddy, James, Kylie R, Fernandez-Ruiz, Daniel, Heath, William R, Haque, Ashraful, Billker, Oliver, Woodhouse, Steven, Cicuta, Pietro, Nicodemi, Mario, Teichmann, Sarah A

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