A risk progression breast epithelial 3D culture model reveals Cx43/hsa_circ_0077755/miR-182 as a biomarker axis for heightened risk of breast cancer initiation von Naser Al Deen, Nataly, Atallah Lanman, Nadia, Chittiboyina, Shirisha, Lelièvre, Sophie, Nasr, Rihab, Nassar, Farah, Zu Dohna, Heinrich, AbouHaidar, Mounir, Talhouk, Rabih

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Over-expression of miR-183-5p or miR-492 triggers invasion and proliferation and loss of polarity in non-neoplastic breast epithelium von Naser Al Deen, Nataly, Atallah Lanman, Nadia, Chittiboyina, Shirisha, Fostok, Sabreen, Nasr, Rihab, Lelièvre, Sophie, Talhouk, Rabih

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Connexin43 as a Tumor Suppressor: Proposed Connexin43 mRNA-circularRNAs-microRNAs Axis Towards Prevention and Early Detection in Breast Cancer von Naser Al Deen, Nataly, AbouHaidar, Mounir, Talhouk, Rabih

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Anti-proliferative and anti-inflammatory activities of the sea cucumber Holothuria polii aqueous extract von Kareh, Mike, El Nahas, Rana, Al-Aaraj, Lamis, Al-Ghadban, Sara, Naser Al Deen, Nataly, Saliba, Najat, El-Sabban, Marwan, Talhouk, Rabih

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Biomimetic sulfated glycosaminoglycans maintain differentiation markers of breast epithelial cells and preferentially inhibit proliferation of cancer cells von Habli, Zeina, Deen, Nataly Naser Al, Malaeb, Waddah, Mahfouz, Nadine, Mermerian, Angela, Talhouk, Rabih, Mhanna, Rami

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Epigenetic regulation during cancer transitions across 11 tumour types von Terekhanova, Nadezhda V., Karpova, Alla, Liang, Wen-Wei, Strzalkowski, Alexander, Chen, Siqi, Li, Yize, Southard-Smith, Austin N., Iglesia, Michael D., Wendl, Michael C., Jayasinghe, Reyka G., Liu, Jingxian, Song, Yizhe, Cao, Song, Houston, Andrew, Liu, Xiuting, Wyczalkowski, Matthew A., Lu, Rita Jui-Hsien, Caravan, Wagma, Shinkle, Andrew, Naser Al Deen, Nataly, Herndon, John M., Mudd, Jacqueline, Ma, Cong, Sarkar, Hirak, Sato, Kazuhito, Ibrahim, Omar M., Mo, Chia-Kuei, Chasnoff, Sara E., Porta-Pardo, Eduard, Held, Jason M., Pachynski, Russell, Schwarz, Julie K., Gillanders, William E., Kim, Albert H., Vij, Ravi, DiPersio, John F., Puram, Sidharth V., Chheda, Milan G., Fuh, Katherine C., DeNardo, David G., Fields, Ryan C., Chen, Feng, Raphael, Benjamin J., Ding, Li

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Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma von Wu, Yige, Terekhanova, Nadezhda V., Caravan, Wagma, Naser Al Deen, Nataly, Lal, Preet, Chen, Siqi, Mo, Chia-Kuei, Cao, Song, Li, Yize, Karpova, Alla, Liu, Ruiyang, Zhao, Yanyan, Shinkle, Andrew, Strunilin, Ilya, Weimholt, Cody, Sato, Kazuhito, Yao, Lijun, Serasanambati, Mamatha, Yang, Xiaolu, Wyczalkowski, Matthew, Zhu, Houxiang, Zhou, Daniel Cui, Jayasinghe, Reyka G., Mendez, Daniel, Wendl, Michael C., Clark, David, Newton, Chelsea, Ruan, Yijun, Reimers, Melissa A., Pachynski, Russell K., Kinsinger, Chris, Jewell, Scott, Chan, Daniel W., Zhang, Hui, Chaudhuri, Aadel A., Chheda, Milan G., Humphreys, Benjamin D., Mesri, Mehdi, Rodriguez, Henry, Hsieh, James J., Ding, Li, Chen, Feng

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Endotoxin Triggers Tumor Initiation Events in Nontumorigenic Breast Epithelial Cells and Enhances Invasion-Related Phenotype in Pretumorigenic and Tumorigenic Breast Epithelial Cel... von Yassine, Farah, Fostok, Sabreen F., Al Deen, Nataly Naser, Talhouk, Rabih S.

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Differential chromatin accessibility and transcriptional dynamics define breast cancer subtypes and their lineages von Iglesia, Michael D., Jayasinghe, Reyka G., Chen, Siqi, Terekhanova, Nadezhda V., Herndon, John M., Storrs, Erik, Karpova, Alla, Zhou, Daniel Cui, Naser Al Deen, Nataly, Shinkle, Andrew T., Lu, Rita Jui-Hsien, Caravan, Wagma, Houston, Andrew, Zhao, Yanyan, Sato, Kazuhito, Lal, Preet, Street, Cherease, Martins Rodrigues, Fernanda, Southard-Smith, Austin N., Targino da Costa, André Luiz N., Zhu, Houxiang, Mo, Chia-Kuei, Crowson, Lisa, Fulton, Robert S., Wyczalkowski, Matthew A., Fronick, Catrina C., Fulton, Lucinda A., Sun, Hua, Davies, Sherri R., Appelbaum, Elizabeth L., Chasnoff, Sara E., Carmody, Madelyn, Brooks, Candace, Liu, Ruiyang, Wendl, Michael C., Oh, Clara, Bender, Diane, Cruchaga, Carlos, Harari, Oscar, Bredemeyer, Andrea, Lavine, Kory, Bose, Ron, Margenthaler, Julie, Held, Jason M., Achilefu, Samuel, Ademuyiwa, Foluso, Aft, Rebecca, Ma, Cynthia, Colditz, Graham A., Ju, Tao, Oh, Stephen T., Fitzpatrick, James, Hwang, E. Shelley, Shoghi, Kooresh I., Chheda, Milan G., Veis, Deborah J., Chen, Feng, Fields, Ryan C., Gillanders, William E., Ding, Li

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Abstract 278: Deciphering circular RNA axes in early-onset breast cancer using a breast epithelial risk-progression 3D culture model von Al Deen, Nataly Naser, Lanman, Nadia Atallah, Chittiboyina, Shirisha, Lelièvre, Sophie, Dohna, Heinrich Zu, AbouHaidar, Mounir, Talhouk, Rabih

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Multi-scale signaling and tumor evolution in high-grade gliomas von Liu, Jingxian, Cao, Song, Imbach, Kathleen J., Gritsenko, Marina A., Lih, Tung-Shing M., Kyle, Jennifer E., Yaron-Barir, Tomer M., Binder, Zev A., Li, Yize, Strunilin, Ilya, Wang, Yi-Ting, Tsai, Chia-Feng, Ma, Weiping, Chen, Lijun, Clark, Natalie M., Shinkle, Andrew, Naser Al Deen, Nataly, Caravan, Wagma, Houston, Andrew, Simin, Faria Anjum, Wyczalkowski, Matthew A., Wang, Liang-Bo, Storrs, Erik, Chen, Siqi, Illindala, Ritvik, Li, Yuping D., Jayasinghe, Reyka G., Rykunov, Dmitry, Cottingham, Sandra L., Chu, Rosalie K., Weitz, Karl K., Moore, Ronald J., Sagendorf, Tyler, Petyuk, Vladislav A., Nestor, Michael, Bramer, Lisa M., Stratton, Kelly G., Schepmoes, Athena A., Couvillion, Sneha P., Eder, Josie, Kim, Young-Mo, Gao, Yuqian, Fillmore, Thomas L., Zhao, Rui, Monroe, Matthew E., Southard-Smith, Austin N., Li, Yang E., Jui-Hsien Lu, Rita, Johnson, Jared L., Wiznerowicz, Maciej, Hostetter, Galen, Newton, Chelsea J., Ketchum, Karen A., Thangudu, Ratna R., Barnholtz-Sloan, Jill S., Wang, Pei, Fenyö, David, An, Eunkyung, Thiagarajan, Mathangi, Robles, Ana I., Mani, D.R., Smith, Richard D., Porta-Pardo, Eduard, Cantley, Lewis C., Iavarone, Antonio, Chen, Feng, Mesri, Mehdi, Nasrallah, MacLean P., Zhang, Hui, Resnick, Adam C., Chheda, Milan G., Rodland, Karin D., Liu, Tao, Ding, Li

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Abstract 4532: Spatial profiling delineates tumor-T-cell dynamics in anti-PD-1-refractory melanoma treated with ipilimumab or ipilimumab plus nivolumab von Deen, Nataly Naser Al, Campbell, Katie M., Medina, Egmidio, Gonzalez, Cynthia R., Scumpia, Philip O., Ribas, Antoni

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Author Correction: Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma von Wu, Yige, Terekhanova, Nadezhda V., Caravan, Wagma, Naser Al Deen, Nataly, Lal, Preet, Chen, Siqi, Mo, Chia-Kuei, Cao, Song, Li, Yize, Karpova, Alla, Liu, Ruiyang, Zhao, Yanyan, Shinkle, Andrew, Strunilin, Ilya, Weimholt, Cody, Sato, Kazuhito, Yao, Lijun, Serasanambati, Mamatha, Yang, Xiaolu, Wyczalkowski, Matthew, Zhu, Houxiang, Zhou, Daniel Cui, Jayasinghe, Reyka G., Mendez, Daniel, Wendl, Michael C., Clark, David, Newton, Chelsea, Ruan, Yijun, Reimers, Melissa A., Pachynski, Russell K., Kinsinger, Chris, Jewell, Scott, Chan, Daniel W., Zhang, Hui, Chaudhuri, Aadel A., Chheda, Milan G., Humphreys, Benjamin D., Mesri, Mehdi, Rodriguez, Henry, Hsieh, James J., Ding, Li, Chen, Feng

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Abstract 2832: Identifying tumor specific surface protein markers for glioblastoma immunotherapy by single-nuclei RNA-seq von Ibrahim, Omar M., Wang, Liang-Bo, Yao, Lijun, Caravan, Wagma, Deen, Nataly Naser Al, Jayasinghe, Reyka G., Chheda, Milan G., Ding, Li

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Abstract 2936: Multi-omic characterization of transitional cell populations in breast cancer von Iglesia, Michael D., Jayasinghe, Reyka G., Zhou, Daniel Cui, Terekhanova, Nadezhda V., Herndon, John, Karpova, Alla, Chen, Siqi, Deen, Nataly Naser Al, Sato, Kazuhito, Chen, Feng, Veis, Deborah J., Fields, Ryan C., Gillanders, William E., Ding, Li

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Abstract 2025: Spatial transcriptomic profiling of progression markers in clear cell renal cell carcinoma von Mo, Chia-Kuei, Wu, Yige, Nadezhda, Terekhanova, Wagma, Caravan, Lal, Preet, Chen, Siqi, Deen, Nataly Naser AL, Liu, Ruiyang, Zhao, Yanyan, Sato, Kazuhito, Yao, Lijun, Serasanambati, Mamatha, Shinkle, Andrew, Jayasinghe, Reyka G., Ding, Li, Chen, Feng

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Comprehensive proteogenomic characterization of rare kidney tumors von Li, Ginny Xiaohe, Chen, Lijun, Hsiao, Yi, Mannan, Rahul, Zhang, Yuping, Luo, Jie, Petralia, Francesca, Cho, Hanbyul, Hosseini, Noshad, Leprevost, Felipe da Veiga, Calinawan, Anna, Li, Yize, Anand, Shankara, Dagar, Aniket, Geffen, Yifat, Kumar-Sinha, Chandan, Chugh, Seema, Le, Anne, Ponce, Sean, Guo, Shenghao, Zhang, Cissy, Schnaubelt, Michael, Al Deen, Nataly Naser, Chen, Feng, Caravan, Wagma, Houston, Andrew, Hopkins, Alex, Newton, Chelsea J., Wang, Xiaoming, Polasky, Daniel A., Haynes, Sarah, Yu, Fengchao, Jing, Xiaojun, Chen, Siqi, Robles, Ana I., Mesri, Mehdi, Thiagarajan, Mathangi, An, Eunkyung, Getz, Gad A., Linehan, W. Marston, Hostetter, Galen, Jewell, Scott D., Chan, Daniel W., Wang, Pei, Omenn, Gilbert S., Mehra, Rohit, Ricketts, Christopher J., Ding, Li, Chinnaiyan, Arul M., Cieslik, Marcin P., Zhang, Hui, Nesvizhskii, Alexey I., Lazar, Alexander J., Paulovich, Amanda G., Antczak, Andrzej, Green, Anthony, Ma’ayan, Avi, Pruetz, Barb, Zhang, Bing, Reva, Boris, Druker, Brian J., Goldthwaite, Charles A., Birger, Chet, Mani, D.R., Chesla, David, Fenyö, David, Schadt, Eric E., Wilson, George, Kołodziejczak, Iga, John, Ivy, Hafron, Jason, Vo, Josh, Zaalishvili, Kakhaber, Ketchum, Karen A., Rodland, Karin D., Nyce, Kristen, Wiznerowicz, Maciej, Domagalski, Marcin J., Anurag, Meenakshi, Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Edwards, Nathan J., Vatanian, Negin, VanderKolk, Pamela, McGarvey, Peter B., Dhir, Rajiv, Thangudu, Ratna R., Crispen, Reese, Smith, Richard D., Payne, Samuel H., Cottingham, Sandra, Cai, Shuang, Carr, Steven A., Liu, Tao, Le, Toan, Ma, Weiping, Zhang, Xu, Lu, Yin, Zhang, Zhen

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Abstract 3127: Comprehensive proteogenomic characterization of rare kidney tumors von Li, Ginny Xiaohe, Hsiao, Yi, Chen, Lijun, Mannan, Rahul, Zhang, Yuping, Petralia, Francesca, Cho, Hanbyul, Hosseini, Noshad, Calinawan, Anna, Li, Yize, Anand, Shankara, Dagar, Aniket, Geffen, Yifat, Leprevost, Felipe V., Le, Anne, Ponce, Sean, Schnaubelt, Michael, Deen, Nataly Naser Al, Caravan, Wagma, Houston, Andrew, Kumar-Sinha, Chandan, Wang, Xiaoming, Chugh, Seema, Omenn, Gilbert S., Chan, Daniel W., Ricketts, Christopher, Mehra, Rohit, Chinnaiyan, Arul, Ding, Li, Cieslik, Marcin, Zhang, Hui, Dhanasekaran, Saravana M., Nesvizhskii, Alexey I.

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Anti-proliferative and anti-inflammatory activities of the sea cucumber aqueous extract von Mike Kareh, Rana El Nahas, Lamis Al-Aaraj, Sara Al-Ghadban, Nataly Naser Al Deen, Najat Saliba, Marwan El-Sabban, Rabih Talhouk

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Epigenetic regulation during cancer transitions across 11 tumour types von Terekhanova, Nadezhda V, Karpova, Alla, Liang, Wen-Wei, Strzalkowski, Alexander, Chen, Siqi, Li, Yize, Southard-Smith, Austin N, Iglesia, Michael D, Wendl, Michael C, Jayasinghe, Reyka G, Liu, Jingxian, Song, Yizhe, Cao, Song, Houston, Andrew, Liu, Xiuting, Wyczalkowski, Michael A, Lu, Rita Jui-Hsien, Caravan, Wagma, Shinkle, Andrew, Naser Al Deen, Nataly, Herndon, John M, Mudd, Jacqueline, Ma, Cong, Sarkar, Hirak, Sato, Kazuhito, Ibrahim, Omar.M, Mo, Chia-Kuei, Chasnoff, Sara E, Porta-Pardo, Eduard, Held, Jasson M, Pachynski, Russell, Schwarz, Julie K, Gillanders, William E, Kim, Albert H, Vij, Ravi, DiPersio, John, Puram, Sidharth V, Chheda, Milan G, Fuh, Katherine C, DeNardo, David G, Fields, Ryan C, Chen, Feng, Raphael, Benjamin J, Ding, Li

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