Biomarker discovery with quantum neural networks: a case-study in CTLA4-activation pathways von Nguyen, Phuong-Nam

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Exploring the landscape of focal amplifications in cancer using AmpliconArchitect von Deshpande, Viraj, Luebeck, Jens, Nguyen, Nam-Phuong D., Bakhtiari, Mehrdad, Turner, Kristen M., Schwab, Richard, Carter, Hannah, Mischel, Paul S., Bafna, Vineet

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Ultra-large alignments using phylogeny-aware profiles von Nguyen, Nam-Phuong D, Mirarab, Siavash, Kumar, Keerthana, Warnow, Tandy

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ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer von Nguyen, Nam-phuong D, Deshpande, Viraj, Luebeck, Jens, Mischel, Paul S, Bafna, Vineet

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TIPP: taxonomic identification and phylogenetic profiling von Nguyen, Nam-Phuong, Mirarab, Siavash, Liu, Bo, Pop, Mihai, Warnow, Tandy

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A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity von Nguyen, Nam-Phuong, Warnow, Tandy, Pop, Mihai, White, Bryan

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Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells von Koga, Tomoyuki, Chaim, Isaac A., Benitez, Jorge A., Markmiller, Sebastian, Parisian, Alison D., Hevner, Robert F., Turner, Kristen M., Hessenauer, Florian M., D’Antonio, Matteo, Nguyen, Nam-phuong D., Saberi, Shahram, Ma, Jianhui, Miki, Shunichiro, Boyer, Antonia D., Ravits, John, Frazer, Kelly A., Bafna, Vineet, Chen, Clark C., Mischel, Paul S., Yeo, Gene W., Furnari, Frank B.

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Simultaneous radiation of bird and mammal lice following the K-Pg boundary von Johnson, Kevin P., Nguyen, Nam-phuong, Sweet, Andrew D., Boyd, Bret M., Warnow, Tandy, Allen, Julie M.

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Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice von Boyd, Bret M, Allen, Julie M, Nguyen, Nam-Phuong, Vachaspati, Pranjal, Quicksall, Zachary S, Warnow, Tandy, Mugisha, Lawrence, Johnson, Kevin P, Reed, David L

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A global research agenda on public health and social measures during emergencies von Ludolph, Ramona, Takahashi, Ryoko, Shroff, Zubin Cyrus, Kosinska, Monika, Schmidt, Tanja, Anan, Huda Haidar, Arifi, Fatima, Yam, Abdoulaye, Rasanathan, Kumanan, Aseffa, Abraham, Nguyen, Phuong Nam, Kato, Masaya, Garg, Aarti, Dorji, Tshewang, Villalobos, Andrea, Haldane, Victoria, Nguyen, Tim, Briand, Sylvie

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Phylogenomics from Whole Genome Sequences Using aTRAM von Allen, Julie M., Boyd, Bret, Nguyen, Nam-Phuong, Vachaspati, Pranjal, Warnow, Tandy, Huang, Daisie I., Grady, Patrick G. S., Bell, Kayce C., Cronk, Quentin C. B., Mugisha, Lawrence, Pittendrigh, Barry R., Leonardi, M. Soledad, Reed, David L., Johnson, Kevin P.

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HIPPI: highly accurate protein family classification with ensembles of HMMs von Nguyen, Nam-Phuong, Nute, Michael, Mirarab, Siavash, Warnow, Tandy

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iBioSim: a tool for the analysis and design of genetic circuits von Myers, Chris J., Barker, Nathan, Jones, Kevin, Kuwahara, Hiroyuki, Madsen, Curtis, Nguyen, Nam-Phuong D.

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Provable user authentication scheme on ECC in multi-server environment von Truong, Toan-Thinh, Tran, Minh-Triet, Duong, Anh-Duc, Nguyen-Pham, Phuong-Nam, Nguyen, Hoang-Anh, Nguyen, Trong-Nguyen

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Human Regulatory T Cells: Understanding the Role of Tregs in Select Autoimmune Skin Diseases and Post-Transplant Nonmelanoma Skin Cancers von Oparaugo, Nicole Chizara, Ouyang, Kelsey, Nguyen, Nam Phuong N, Nelson, Amanda M, Agak, George W

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Phylogenomics using Target-Restricted Assembly Resolves Intrageneric Relationships of Parasitic Lice (Phthiraptera: Columbicola) von Boyd, Bret M., Allen, Julie M., Nguyen, Nam-Phuong, Sweet, Andrew D., Warnow, Tandy, Shapiro, Michael D., Villa, Scott M., Bush, Sarah E., Clayton, Dale H., Johnson, Kevin P.

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Two-Pore Channel Function Is Crucial for the Migration of Invasive Cancer Cells von Nguyen, Ong Nam Phuong, Grimm, Christian, Schneider, Lina S, Chao, Yu-Kai, Atzberger, Carina, Bartel, Karin, Watermann, Anna, Ulrich, Melanie, Mayr, Doris, Wahl-Schott, Christian, Biel, Martin, Vollmar, Angelika M

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Electrodeposited nickel–graphene nanocomposite coating: influence of graphene nanoplatelet size on wear and corrosion resistance von Van Hau, Tran, Van Trinh, Pham, Van Tu, Nguyen, Duoc, Phan Nguyen Duc, Phuong, Mai Thi, Toan, Nguyen Xuan, Phuong, Doan Dinh, Nam, Nguyen Phuong Hoai, Lam, Vu Dinh, Minh, Phan Ngoc, Thang, Bui Hung

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Agonist-mediated switching of ion selectivity in TPC2 differentially promotes lysosomal function von Gerndt, Susanne, Chen, Cheng-Chang, Chao, Yu-Kai, Yuan, Yu, Burgstaller, Sandra, Scotto Rosato, Anna, Krogsaeter, Einar, Urban, Nicole, Jacob, Katharina, Nguyen, Ong Nam Phuong, Miller, Meghan T, Keller, Marco, Vollmar, Angelika M, Gudermann, Thomas, Zierler, Susanna, Schredelseker, Johann, Schaefer, Michael, Biel, Martin, Malli, Roland, Wahl-Schott, Christian, Bracher, Franz, Patel, Sandip, Grimm, Christian

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Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini von Shapiro, Julie Teresa, Mollerup, Sarah, Jensen, Randi Holm, Olofsson, Jill Katharina, Nguyen, Nam-phuong D., Hansen, Thomas Arn, Vinner, Lasse, Monadjem, Ara, McCleery, Robert A., Hansen, Anders J.

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