Computational Methods for 3D Genome Analysis

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A new method of reinforcing graphene nanoplatelets in glass/epoxy composites: Eine neue Methode zur Verstärkung von Glas‐/Epoxid‐Verbundwerkstoffen mit Graphen‐Nanoplättchen... von Malik, K., Ahmad, F., Yunus, N. A., Nakato, T., Mouri, E., Dawood, S., Memon, I. R.

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Liquid Crystalline Nature of K4Nb6O17 Nanosheet Sols and Their Macroscopic Alignment von Miyamoto, N., Nakato, T.

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Fuel potential of faecal sludge: calorific value results from Uganda, Ghana and Senegal von MUSPRATT, A. Murray, NAKATO, T, NIWAGABA, C, DIONE, H, KANG, J, STUPIN, L, REGULINSKI, J, MBEGUERE, M, STRANDE, L

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Construction of Coarse-Grained Molecular Dynamics Model of Nuclear Global Chromosomes Dynamics in Mammalian Cells von Awazu, Akinori, Komoto, Tetsushi

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Micro-C Analysis Workflow Using Pairtools and Juicer von Sakata, Toyonori

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Single-Cell Hi-C Analysis Workflow with Pairtools von Galitsyna, Aleksandra

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Machine and Deep Learning Methods for Predicting 3D Genome Organization von Wall, Brydon P. G., Nguyen, My, Harrell, J. Chuck, Dozmorov, Mikhail G.

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Systematic Inference of Multi-scale Chromatin Sub-compartments Using Calder2 von Liu, Yuanlong

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Exploring Cohesin-Related Multiomics Information in the Web Browser von Wang, Jiankang

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Read Mapping for Hi-C Analysis von Kelly, Simon Thomas, Tanaka, Kugui, Hosaka, Chiaki, Yuhara, Satoshi

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Learning Enhancer–Gene associations from Bulk Transcriptomic and Epigenetic Sequencing Data with STITCHIT von Rumpf, Laura, Schulz, Marcel H.

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Three-Dimensional Simulation of Whole-Genome Structuring Through the Transition from Anaphase to Interphase von Fujishiro, Shin, Sasai, Masaki

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Structural Maintenance of Chromosomes Complexes von Jeppsson, Kristian

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Analysis and Visualization of Multiple Hi-C and Micro-C Data with CustardPy von Nagaoka, Yuya, Nakato, Ryuichiro

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Extracting Chromosome Structural Information as One-Dimensional Metrics and Integrating Them with Epigenomics von Wang, Jiankang, Chen, Haoping

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Hi-C/3C-seq Data Analysis for Prokaryotic Genomes with HiC-Pro von Takemata, Naomichi

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CWL-Based Analysis Pipeline for Hi-C Data: From FASTQ Files to Matrices von Miura, Hisashi, Cerbus, Rory T., Noda, Izumi, Hiratani, Ichiro

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Methods for Genome-Wide Chromatin Interaction Analysis von Okabe, Atsushi

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HOMER for Analysis of Hi-C Data and Assessment of Composite Structure of the X Chromosome von Kriz, Andrea J.

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