Subtracting the background by reducing cell-free DNA’s confounding effects on Mycobacterium tuberculosis quantitation and the sputum microbiome von Naidoo, Charissa C., Venter, Rouxjeane, Codony, Francesc, Agustí, Gemma, Kitchin, Natasha, Naidoo, Selisha, Monaco, Hilary, Mishra, Hridesh, Li, Yonghua, Clemente, Jose C., Warren, Robin M., Segal, Leopoldo N., Theron, Grant

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The microbiome and tuberculosis: state of the art, potential applications, and defining the clinical research agenda von Naidoo, Charissa C, Nyawo, Georgina R, Wu, Benjamin G, Walzl, Gerhard, Warren, Robin M, Segal, Leopoldo N, Theron, Grant

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Xpert MTB/RIF Ultra Is Highly Sensitive for the Diagnosis of Tuberculosis Lymphadenitis in a High-HIV Setting von Minnies, Stephanie, Reeve, Byron W. P., Rockman, Loren, Nyawo, Georgina, Naidoo, Charissa C., Kitchin, Natasha, Rautenbach, Cornelia, Wright, Colleen A., Whitelaw, Andrew, Schubert, Pawel, Warren, Robin M., Theron, Grant

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Evaluation of the airway microbiome in nontuberculous mycobacteria disease von Sulaiman, Imran, Wu, Benjamin G, Li, Yonghua, Scott, Adrienne S, Malecha, Patrick, Scaglione, Benjamin, Wang, Jing, Basavaraj, Ashwin, Chung, Samuel, Bantis, Katrina, Carpenito, Joseph, Clemente, Jose C, Shen, Nan, Bessich, Jamie, Rafeq, Samaan, Michaud, Gaetene, Donington, Jessica, Naidoo, Charissa, Theron, Grant, Schattner, Gail, Garofano, Suzette, Condos, Rany, Kamelhar, David, Addrizzo-Harris, Doreen, Segal, Leopoldo N

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Xpert MTB/RIF Ultra and Xpert MTB/RIF for diagnosis of tuberculosis in an HIV-endemic setting with a high burden of previous tuberculosis: a two-cohort diagnostic accuracy study von Mishra, Hridesh, Reeve, Byron W P, Palmer, Zaida, Caldwell, Judy, Dolby, Tania, Naidoo, Charissa C, Jackson, Jennifer G, Schumacher, Samuel G, Denkinger, Claudia M, Diacon, Andreas H, van Helden, Paul D, Marx, Florian M, Warren, Robin M, Theron, Grant

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Bad company? The pericardium microbiome in people investigated for tuberculous pericarditis in an HIV-prevalent setting von Nyawo, Georgina, Naidoo, Charissa C., Wu, Benjamin G., Kwok, Benjamin, Clemente, Jose C., Li, Yonghua, Minnies, Stephanie, Reeve, Byron, Moodley, Suventha, John, Thadathilankal-Jess, Karamchand, Sumanth, Singh, Shivani, Pecararo, Alfonso, Doubell, Anton, Kyriakakis, Charles, Warren, Robin, Segal, Leopoldo N., Theron, Grant

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PneumoniaCheck, a novel aerosol collection device, permits capture of airborne Mycobacterium tuberculosis and characterisation of the cough aeromicrobiome in people with tuberculos... von Chiyaka, Tinaye L, Nyawo, Georgina R, Naidoo, Charissa C, Moodley, Suventha, Clemente, Jose C, Malherbe, Stephanus T, Warren, Robin M, Ku, David N, Segal, Leopoldo N, Theron, Grant

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Anaerobe-enriched gut microbiota predicts pro-inflammatory responses in pulmonary tuberculosis von Naidoo, Charissa C., Nyawo, Georgina R., Sulaiman, Imran, Wu, Benjamin G., Turner, Carolin T., Bu, Kevin, Palmer, Zaida, Li, Yonghua, Reeve, Byron W.P., Moodley, Suventha, Jackson, Jennifer G., Limberis, Jason, Diacon, Andreas H., van Helden, Paul D., Clemente, Jose C., Warren, Robin M., Noursadeghi, Mahdad, Segal, Leopoldo N., Theron, Grant

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Fitness-compensatory mutations facilitate the spread of drug-resistant F15/LAM4/KZN and F28 Mycobacterium tuberculosis strains in KwaZulu-Natal, South Africa von Naidoo, Charissa C., Pillay, Manormoney

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An Archetypical Model for Engrafting Bacteroides fragilis into Conventional Mice Following Reproducible Antibiotic Conditioning of the Gut Microbiota von Eribo, Osagie A, Naidoo, Charissa C, Theron, Grant, Walzl, Gerhard, du Plessis, Nelita, Chegou, Novel N

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Point-of-care C-reactive protein and Xpert MTB/RIF Ultra for tuberculosis screening and diagnosis in unselected antiretroviral therapy initiators: a prospective, cross-sectional, d... von Reeve, Byron W P, Ndlangalavu, Gcobisa, Mishra, Hridesh, Palmer, Zaida, Tshivhula, Happy, Rockman, Loren, Naidoo, Selisha, Mbu, Desiree L, Naidoo, Charissa C, Derendinger, Brigitta, Walzl, Gerhard, Malherbe, Stephanus T, van Helden, Paul D, Semitala, Fred C, Yoon, Christina, Gupta, Rishi K, Noursadeghi, Mahdad, Warren, Robin M, Theron, Grant

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Latent Tuberculosis Infection Is Associated with an Enrichment of Short-Chain Fatty Acid-Producing Bacteria in the Stool of Women Living with HIV von Moodley, Suventha, Kroon, Elouise, Naidoo, Charissa C, Nyawo, Georgina R, Wu, Benjamin G, Naidoo, Selisha, Chiyaka, Tinaye L, Tshivhula, Happy, Singh, Shivani, Li, Yonghua, Warren, Robin M, Hoal, Eileen G, Schurr, Erwin, Clemente, Jose C, Segal, Leopoldo N, Möller, Marlo, Theron, Grant

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PA-788 Can we escape ESKAPE bacteria: trends of antimicrobial resistance and single nucleotide polymorphisms in ESKAPE bBacteria in stool during and post TB treatment von Moodley, Suventha, Porter, Tanner, Naidoo, Charissa, Tshivhula, Happy, Folkerts, Megan, Bowers, Jolene, Engelthaler, David, Theron, Grant

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An Archetypical Model for Engrafting IBacteroides fragilis/I into Conventional Mice Following Reproducible Antibiotic Conditioning of the Gut Microbiota von Eribo, Osagie A, Naidoo, Charissa C, Theron, Grant, Walzl, Gerhard, du Plessis, Nelita, Chegou, Novel N

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Additional file 1 of PneumoniaCheck, a novel aerosol collection device, permits capture of airborne Mycobacterium tuberculosis and characterisation of the cough aeromicrobiome in p... von Chiyaka, Tinaye L., Nyawo, Georgina R., Naidoo, Charissa C., Moodley, Suventha, Clemente, Jose C., Malherbe, Stephanus T., Warren, Robin M., Ku, David N., Segal, Leopoldo N., Theron, Grant

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