Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data von Dimitrov, Daniel, Türei, Dénes, Garrido-Rodriguez, Martin, Burmedi, Paul L., Nagai, James S., Boys, Charlotte, Ramirez Flores, Ricardo O., Kim, Hyojin, Szalai, Bence, Costa, Ivan G., Valdeolivas, Alberto, Dugourd, Aurélien, Saez-Rodriguez, Julio

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Spatial multi-omic map of human myocardial infarction von Kuppe, Christoph, Ramirez Flores, Ricardo O., Li, Zhijian, Hayat, Sikander, Levinson, Rebecca T., Liao, Xian, Hannani, Monica T., Tanevski, Jovan, Wünnemann, Florian, Nagai, James S., Halder, Maurice, Schumacher, David, Menzel, Sylvia, Schäfer, Gideon, Hoeft, Konrad, Cheng, Mingbo, Ziegler, Susanne, Zhang, Xiaoting, Peisker, Fabian, Kaesler, Nadine, Saritas, Turgay, Xu, Yaoxian, Kassner, Astrid, Gummert, Jan, Morshuis, Michiel, Amrute, Junedh, Veltrop, Rogier J. A., Boor, Peter, Klingel, Karin, Van Laake, Linda W., Vink, Aryan, Hoogenboezem, Remco M., Bindels, Eric M. J., Schurgers, Leon, Sattler, Susanne, Schapiro, Denis, Schneider, Rebekka K., Lavine, Kory, Milting, Hendrik, Costa, Ivan G., Saez-Rodriguez, Julio, Kramann, Rafael

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A stomata classification and detection system in microscope images of maize cultivars von Aono, Alexandre H., Nagai, James S., Dickel, Gabriella da S. M., Marinho, Rafaela C., de Oliveira, Paulo E. A. M., Papa, Joao P., Faria, Fabio A.

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CrossTalkeR: analysis and visualization of ligand–receptorne tworks von Nagai, James S, Leimkühler, Nils B, Schaub, Michael T, Schneider, Rebekka K, Costa, Ivan G

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Platelet-instructed SPP1+ macrophages drive myofibroblast activation in fibrosis in a CXCL4-dependent manner von Hoeft, Konrad, Schaefer, Gideon J.L., Kim, Hyojin, Schumacher, David, Bleckwehl, Tore, Long, Qingqing, Klinkhammer, Barbara Mara, Peisker, Fabian, Koch, Lars, Nagai, James, Halder, Maurice, Ziegler, Susanne, Liehn, Elisa, Kuppe, Christoph, Kranz, Jennifer, Menzel, Sylvia, Costa, Ivan, Wahida, Adam, Boor, Peter, Schneider, Rebekka K., Hayat, Sikander, Kramann, Rafael

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Correction: A stomata classification and detection system in microscope images of maize cultivars von Aono, Alexandre H, Nagai, James S, Dickel, Gabriella da S M, Marinho, Rafaela C, de Oliveira, Paulo E A M, Papa, João P, Faria, Fabio A

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Mapping the cardiac vascular niche in heart failure von Peisker, Fabian, Halder, Maurice, Nagai, James, Ziegler, Susanne, Kaesler, Nadine, Hoeft, Konrad, Li, Ronghui, Bindels, Eric M. J., Kuppe, Christoph, Moellmann, Julia, Lehrke, Michael, Stoppe, Christian, Schaub, Michael T., Schneider, Rebekka K., Costa, Ivan, Kramann, Rafael

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Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT) von Joodaki, Mehdi, Shaigan, Mina, Parra, Victor, Bülow, Roman D, Kuppe, Christoph, Hölscher, David L, Cheng, Mingbo, Nagai, James S, Goedertier, Michaël, Bouteldja, Nassim, Tesar, Vladimir, Barratt, Jonathan, Roberts, Ian SD, Coppo, Rosanna, Kramann, Rafael, Boor, Peter, Costa, Ivan G

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scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference von Li, Zhijian, Nagai, James S, Kuppe, Christoph, Kramann, Rafael, Costa, Ivan G

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Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling von Schreibing, Felix, Hannani, Monica T, Kim, Hyojin, Nagai, James S, Ticconi, Fabio, Fewings, Eleanor, Bleckwehl, Tore, Begemann, Matthias, Torow, Natalia, Kuppe, Christoph, Kurth, Ingo, Kranz, Jennifer, Frank, Dario, Anslinger, Teresa M, Ziegler, Patrick, Kraus, Thomas, Enczmann, Jürgen, Balz, Vera, Windhofer, Frank, Balfanz, Paul, Kurts, Christian, Marx, Gernot, Marx, Nikolaus, Dreher, Michael, Schneider, Rebekka K, Saez-Rodriguez, Julio, Costa, Ivan, Hayat, Sikander, Kramann, Rafael

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Single-cell analysis of cultured bone marrow stromal cells reveals high similarity to fibroblasts in situ von Stalmann, Ursula S.A., Banjanin, Bella, Snoeren, Inge A.M., Nagai, James S., Leimkühler, Nils B., Li, Ronghui, Benabid, Adam, Pritchard, Jessica E., Malyaran, Hanna, Neuss, Sabine, Bindels, Eric M., Costa, Ivan G., Schneider, Rebekka K.

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Non-canonical Hedgehog signaling mediates profibrotic hematopoiesis-stroma crosstalk in myeloproliferative neoplasms von Pritchard, Jessica E., Pearce, Juliette E., Snoeren, Inge A.M., Fuchs, Stijn N.R., Götz, Katrin, Peisker, Fabian, Wagner, Silke, Benabid, Adam, Lutterbach, Niklas, Klöker, Vanessa, Nagai, James S., Hannani, Monica T., Galyga, Anna K., Sistemich, Ellen, Banjanin, Bella, Flosdorf, Niclas, Bindels, Eric, Olschok, Kathrin, Biaesch, Katharina, Chatain, Nicolas, Bhagwat, Neha, Dunbar, Andrew, Sarkis, Rita, Naveiras, Olaia, Berres, Marie-Luise, Koschmieder, Steffen, Levine, Ross L., Costa, Ivan G., Gleitz, Hélène F.E., Kramann, Rafael, Schneider, Rebekka K.

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Enhanced fatty acid oxidation through metformin and baicalin as therapy for COVID-19 and associated inflammatory states in lung and kidney von Miguel, Verónica, Rey-Serra, Carlos, Tituaña, Jessica, Sirera, Belén, Alcalde-Estévez, Elena, Herrero, J Ignacio, Ranz, Irene, Fernández, Laura, Castillo, Carolina, Sevilla, Lucía, Nagai, James, Reimer, Katharina C, Jansen, Jitske, Kramann, Rafael, Costa, Ivan G, Castro, Ana, Sancho, David, Rodríguez González-Moro, José Miguel, Lamas, Santiago

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Heterogeneous bone-marrow stromal progenitors drive myelofibrosis via a druggable alarmin axis von Leimkühler, Nils B., Gleitz, Hélène F.E., Ronghui, Li, Snoeren, Inge A.M., Fuchs, Stijn N.R., Nagai, James S., Banjanin, Bella, Lam, King H., Vogl, Thomas, Kuppe, Christoph, Stalmann, Ursula S.A., Büsche, Guntram, Kreipe, Hans, Gütgemann, Ines, Krebs, Philippe, Banz, Yara, Boor, Peter, Tai, Evelyn Wing-Yin, Brümmendorf, Tim H., Koschmieder, Steffen, Crysandt, Martina, Bindels, Eric, Kramann, Rafael, Costa, Ivan G., Schneider, Rebekka K.

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A stomata classification and detection system in microscope images of maize cultivars von Aono, Alexandre H., Nagai, James S., Dickel, Gabriella da S. M., Marinho, Rafaela C., de Oliveira, Paulo E. A. M., Papa, Joao P., Faria, Fabio A.

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S205: INHIBITING THE ALARMIN‐DRIVEN HEMATOPOIESIS‐STROMAL CELLS CROSSTALK IN PRIMARY MYELOFIBROSIS AMELIORATES BONE MARROW FIBROSIS von Gleitz, Hélène, Snoeren, Inge, Fuchs, Stijn, Nagai, James, Dugourd, Aurélien, Boys, Charlotte, Klöker, Vanessa, Pritchard, Jessica, Bindels, Eric, Te Boekhorst, Peter André Willem, Crysandt, Martina, Saez‐Rodriguez, Julio, Vogl, Thomas, Kramann, Rafael, Costa, Ivan, Schneider, Rebekka

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The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns von Aono, Alexandre Hild, Gonzaga Pimenta, Ricardo Jose, Basso Garcia, Ana Letycia, Correr, Fernando Henrique, Hosaka, Guilherme Kenichi, Carrasco, Marishani Marin, Cardoso-Silva, Claudio Benicio, Mancini, Melina Cristina, Sforca, Danilo Augusto, dos Santos, Lucas Borges, Nagai, James Shiniti, Pinto, Luciana Rossini, de Andrade Landell, Marcos Guimaraes, Carneiro, Monalisa Sampaio, Balsalobre, Thiago Willian, Quiles, Marcos Goncalves, Pereira, Welison Andrade, Alves Margarido, Gabriel Rodrigues, de Souza, Anete Pereira

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2003 – PHYSICALLY INTERACTING CELL SEQUENCING IN BONE MARROW FIBROSIS REVEALS DISTINCT CELLULAR NICHES IN FIBROSIS von Gleitz, Helene, Nagai, James, Ruiz, Mayra, Fuchs, Stijn, Snoeren, Inge, Boeree, Aurélie, Cesaro, Giulia, Kramann, Rafael, Costa, Ivan, Schneider, Rebekka

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Metaphyseal Stromal Progenitor Cells Are Skewed Via Wnt-Activation Towards Osteogenesis in Progressed Myelofibrosis von Banjanin, Bella, Nagai, James, Mun, Yevin, Snoeren, Inge, Fuchs, Stijn, Weiler, Marek, Kiessling, Fabian, Lammers, Twan, Sivaraj, Kishor, Adams, Ralf, Nombela-Arrieta, Cesar, Costa, Ivan, Schneider, Rebekka K.

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Microbial co-occurrence network and its key microorganisms in soil with permanent application of composted tannery sludge von Ishimoto, Caroline Kie, Aono, Alexandre Hild, Nagai, James Shiniti, Sousa, Hério, Miranda, Ana Roberta Lima, Melo, Vania Maria Maciel, Mendes, Lucas William, Araujo, Fabio Fernando, de Melo, Wanderley José, Kuroshu, Reginaldo Massanobu, Esposito, Elisa, Araujo, Ademir Sergio Ferreira

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