An evaluation of the performance of Restricted Boltzmann Machines as a model for anomaly network intrusion detection von Aldwairi, Tamer, Perera, Dilina, Novotny, Mark A.

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Single virus genomics: a new tool for virus discovery von Allen, Lisa Zeigler, Ishoey, Thomas, Novotny, Mark A, McLean, Jeffrey S, Lasken, Roger S, Williamson, Shannon J

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Order amidst disorder for two-dimensional nanoribbons with various boundary conditions von Novotny, Mark A., Inkoom, G., Novotný, Tomáš

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A Whole Blood Molecular Signature for Acute Myocardial Infarction von Muse, Evan D., Kramer, Eric R., Wang, Haiying, Barrett, Paddy, Parviz, Fereshteh, Novotny, Mark A., Lasken, Roger S., Jatkoe, Timothy A., Oliveira, Glenn, Peng, Hongfan, Lu, Jerry, Connelly, Mark C., Schilling, Kurt, Rao, Chandra, Torkamani, Ali, Topol, Eric J.

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Nuclear RNA-seq of single neurons reveals molecular signatures of activation von Lacar, Benjamin, Linker, Sara B., Jaeger, Baptiste N., Krishnaswami, Suguna Rani, Barron, Jerika J., Kelder, Martijn J. E., Parylak, Sarah L., Paquola, Apuã C. M., Venepally, Pratap, Novotny, Mark, O'Connor, Carolyn, Fitzpatrick, Conor, Erwin, Jennifer A., Hsu, Jonathan Y., Husband, David, McConnell, Michael J., Lasken, Roger, Gage, Fred H.

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Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons von Krishnaswami, Suguna Rani, Grindberg, Rashel V, Novotny, Mark, Venepally, Pratap, Lacar, Benjamin, Bhutani, Kunal, Linker, Sara B, Pham, Son, Erwin, Jennifer A, Miller, Jeremy A, Hodge, Rebecca, McCarthy, James K, Kelder, Martijn, McCorrison, Jamison, Aevermann, Brian D, Fuertes, Francisco Diez, Scheuermann, Richard H, Lee, Jun, Lein, Ed S, Schork, Nicholas, McConnell, Michael J, Gage, Fred H, Lasken, Roger S

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Comparison of D-Wave Quantum Annealing and Classical Simulated Annealing for Local Minima Determination von Koshka, Yaroslav, Novotny, Mark A.

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A full-ocean-depth rated modular lander and pressure-retaining sampler capable of collecting hadal-endemic microbes under in situ conditions von Peoples, Logan M., Norenberg, Matthew, Price, David, McGoldrick, Madeline, Novotny, Mark, Bochdansky, Alexander, Bartlett, Douglas H.

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RNA-sequencing from single nuclei von Grindberg, Rashel V., Yee-Greenbaum, Joyclyn L., McConnell, Michael J., Novotny, Mark, O'Shaughnessy, Andy L., Lambert, Georgina M., Araúzo-Bravo, Marcos J., Lee, Jun, Fishman, Max, Robbins, Gillian E., Lin, Xiaoying, Venepally, Pratap, Badger, Jonathan H., Galbraith, David W., Gage, Fred H., Lasken, Roger S.

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A niche-dependent myeloid transcriptome signature defines dormant myeloma cells von Khoo, Weng Hua, Ledergor, Guy, Weiner, Assaf, Roden, Daniel L., Terry, Rachael L., McDonald, Michelle M., Chai, Ryan C., De Veirman, Kim, Owen, Katie L., Opperman, Khatora S., Vandyke, Kate, Clark, Justine R., Seckinger, Anja, Kovacic, Natasa, Nguyen, Akira, Mohanty, Sindhu T., Pettitt, Jessica A., Xiao, Ya, Corr, Alexander P., Seeliger, Christine, Novotny, Mark, Lasken, Roger S., Nguyen, Tuan V., Oyajobi, Babatunde O., Aftab, Dana, Swarbrick, Alexander, Parker, Belinda, Hewett, Duncan R., Hose, Dirk, Vanderkerken, Karin, Zannettino, Andrew C.W., Amit, Ido, Phan, Tri Giang, Croucher, Peter I.

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L1-associated genomic regions are deleted in somatic cells of the healthy human brain von Erwin, Jennifer A, Paquola, Apuã C M, Singer, Tatjana, Gallina, Iryna, Novotny, Mark, Quayle, Carolina, Bedrosian, Tracy A, Alves, Francisco I A, Butcher, Cheyenne R, Herdy, Joseph R, Sarkar, Anindita, Lasken, Roger S, Muotri, Alysson R, Gage, Fred H

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Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage von Dupont, Chris L, Rusch, Douglas B, Yooseph, Shibu, Lombardo, Mary-Jane, Alexander Richter, R, Valas, Ruben, Novotny, Mark, Yee-Greenbaum, Joyclyn, Selengut, Jeremy D, Haft, Dan H, Halpern, Aaron L, Lasken, Roger S, Nealson, Kenneth, Friedman, Robert, Craig Venter, J

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The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1) von León‐Zayas, Rosa, Peoples, Logan, Biddle, Jennifer F., Podell, Sheila, Novotny, Mark, Cameron, James, Lasken, Roger S., Bartlett, Douglas H.

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Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development von Giraddi, Rajshekhar R., Chung, Chi-Yeh, Heinz, Richard E., Balcioglu, Ozlen, Novotny, Mark, Trejo, Christy L., Dravis, Christopher, Hagos, Berhane M., Mehrabad, Elnaz Mirzaei, Rodewald, Luo Wei, Hwang, Jae Y., Fan, Cheng, Lasken, Roger, Varley, Katherine E., Perou, Charles M., Wahl, Geoffrey M., Spike, Benjamin T.

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Measuring the Impact of Accurate Feature Selection on the Performance of RBM in Comparison to State of the Art Machine Learning Algorithms von Aldwairi, Tamer, Perera, Dilina, Novotny, Mark A.

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Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis von Kang, Jinsuk, Lienhard, Matthias, Pastor, William A., Chawla, Ashu, Novotny, Mark, Tsagaratou, Ageliki, Lasken, Roger S., Thompson, Elizabeth C., Surani, M. Azim, Koralov, Sergei B., Kalantry, Sundeep, Chavez, Lukas, Rao, Anjana

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Comparison of Use of a 2000 Qubit D-Wave Quantum Annealer and MCMC for Sampling, Image Reconstruction, and Classification von Koshka, Yaroslav, Novotny, Mark A.

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Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells von Brown, David M, Hixon, Alison M, Oldfield, Lauren M, Zhang, Yun, Novotny, Mark, Wang, Wei, Das, Suman R, Shabman, Reed S, Tyler, Kenneth L, Scheuermann, Richard H

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Application of machine learning models to animal health pharmacovigilance: A proof-of-concept study von Whittle, Edward, Novotny, Mark J, McCaul, Sean P, Moeller, Fabian, Junk, Malte, Giraldo, Camilo, O'Gorman, Michael, de Chenu, Christian, Dzavan, Pavol

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Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons von Hodge, Rebecca D., Miller, Jeremy A., Novotny, Mark, Kalmbach, Brian E., Ting, Jonathan T., Bakken, Trygve E., Aevermann, Brian D., Barkan, Eliza R., Berkowitz-Cerasano, Madeline L., Cobbs, Charles, Diez-Fuertes, Francisco, Ding, Song-Lin, McCorrison, Jamison, Schork, Nicholas J., Shehata, Soraya I., Smith, Kimberly A., Sunkin, Susan M., Tran, Danny N., Venepally, Pratap, Yanny, Anna Marie, Steemers, Frank J., Phillips, John W., Bernard, Amy, Koch, Christof, Lasken, Roger S., Scheuermann, Richard H., Lein, Ed S.

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