vcfr: a package to manipulate and visualize variant call format data in R von Knaus, Brian J., Grünwald, Niklaus J.

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Metacoder: An R package for visualization and manipulation of community taxonomic diversity data von Foster, Zachary S L, Sharpton, Thomas J, Grünwald, Niklaus J

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Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality von Kamvar, Zhian N, Brooks, Jonah C, Grünwald, Niklaus J

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Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction von Kamvar, Zhian N, Tabima, Javier F, Grünwald, Niklaus J

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Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes von Goss, Erica M., Tabima, Javier F., Cooke, David E. L., Restrepo, Silvia, Fry, William E., Forbes, Gregory A., Fieland, Valerie J., Cardenas, Martha, Grünwald, Niklaus J.

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Population Genomics of Fungal and Oomycete Pathogens von Grünwald, Niklaus J, McDonald, Bruce A, Milgroom, Michael G

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effectR : An Expandable R Package to Predict Candidate RxLR and CRN Effectors in Oomycetes Using Motif Searches von Tabima, Javier F, Grünwald, Niklaus J

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Ecology and Evolution of the Sudden Oak Death Pathogen Phytophthora ramorum von Grünwald, Niklaus J, LeBoldus, Jared M, Hamelin, Richard C

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Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals von GRÜNWALD, NIKLAUS J, GOSS, ERICA M, PRESS, CAROLINE M

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Emergence of the sudden oak death pathogen Phytophthora ramorum von Grünwald, Niklaus J, Garbelotto, Matteo, Goss, Erica M, Heungens, Kurt, Prospero, Simone

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Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data von Foster, Zachary S L, Tupper, Andrew S, Press, Caroline M, Grünwald, Niklaus J

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Openness and computational reproducibility in plant pathology: where we stand and a way forward von Sparks, Adam Henry, Del Ponte, Emerson Medeiros, Alves, Kaique, Foster, Zachary S L, Grünwald, Niklaus

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Population History and Pathways of Spread of the Plant Pathogen Phytophthora plurivora von Schoebel, Corine N, Stewart, Jane, Gruenwald, Niklaus J, Rigling, Daniel, Prospero, Simone, Gijzen, Mark

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Phytophthora community structure analyses in Oregon nurseries inform systems approaches to disease management von Parke, Jennifer L, Knaus, Brian J, Fieland, Valerie J, Lewis, Carrie, Grünwald, Niklaus J

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High levels of diversity and population structure in the potato late blight pathogen at the Mexico centre of origin von Wang, Jianan, Fernández‐Pavía, Sylvia P., Larsen, Meredith M., Garay‐Serrano, Edith, Gregorio‐Cipriano, Rosario, Rodríguez‐Alvarado, Gerardo, Grünwald, Niklaus J., Goss, Erica M.

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Population Genetic Analysis Infers Migration Pathways of Phytophthora ramorum in US Nurseries von Goss, Erica M, Larsen, Meg, Chastagner, Gary A, Givens, Donald R, Grunwald, Niklaus J

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Diversification of plasmids in a genus of pathogenic and nitrogen-fixing bacteria von Weisberg, Alexandra J, Miller, Marilyn, Ream, Walt, Grünwald, Niklaus J, Chang, Jeff H

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Phylogeographic Approaches to Characterize the Emergence of Plant Pathogens von Rasmussen, David A, Grünwald, Niklaus J

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High-Quality, Phased Genomes of Phytophthora ramorum Clonal Lineages NA1 and EU1 von Carleson, Nicholas C, Press, Caroline M, Grünwald, Niklaus J

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Fungicide Sensitivity of U.S. Genotypes of Phytophthora infestans to Six Oomycete-Targeted Compounds von Saville, Amanda, Graham, Kim, Grünwald, Niklaus J, Myers, Kevin, Fry, William E, Ristaino, Jean Beagle

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