Molecular Characterization of the Bacterial Communities in the Different Compartments of a Full-Scale Reverse-Osmosis Water Purification Plant von Bereschenko, L.A, Heilig, G.H.J, Nederlof, M.M, van Loosdrecht, M.C.M, Stams, A.J.M, Euverink, G.J.W

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Rapid KRAS, EGFR, BRAF and PIK3CA mutation analysis of fine needle aspirates from non-small-cell lung cancer using allele-specific qPCR von van Eijk, Ronald, Licht, Jappe, Schrumpf, Melanie, Talebian Yazdi, Mehrdad, Ruano, Dina, Forte, Giusi I, Nederlof, Petra M, Veselic, Maud, Rabe, Klaus F, Annema, Jouke T, Smit, Vincent, Morreau, Hans, van Wezel, Tom

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Effect of temperature on the energy utilization efficiencies of digested protein, fat, and carbohydrates in Nile tilapia (Oreochromis niloticus) von Dey, B.K., Verdegem, M.C.J., Nederlof, M.A.J., Masagounder, K., Mas-Muñoz, J., Schrama, J.W.

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An aCGH classifier derived from BRCA1-mutated breast cancer and benefit of high-dose platinum-based chemotherapy in HER2-negative breast cancer patients von Vollebergh, M.A., Lips, E.H., Nederlof, P.M., Wessels, L.F.A., Schmidt, M.K., van Beers, E.H., Cornelissen, S., Holtkamp, M., Froklage, F.E., de Vries, E.G.E., Schrama, J.G., Wesseling, J., van de Vijver, M.J., van Tinteren, H., de Bruin, M., Hauptmann, M., Rodenhuis, S., Linn, S.C.

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Triple-negative breast cancer: BRCAness and concordance of clinical features with BRCA1-mutation carriers von Lips, E H, Mulder, L, Oonk, A, van der Kolk, L E, Hogervorst, F B L, Imholz, A L T, Wesseling, J, Rodenhuis, S, Nederlof, P M

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Genomic patterns resembling BRCA1- and BRCA2-mutated breast cancers predict benefit of intensified carboplatin-based chemotherapy von Vollebergh, Marieke A, Lips, Esther H, Nederlof, Petra M, Wessels, Lodewyk F A, Wesseling, Jelle, Vd Vijver, Marc J, de Vries, Elisabeth G E, van Tinteren, Harm, Jonkers, Jos, Hauptmann, Michael, Rodenhuis, Sjoerd, Linn, Sabine C

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Neoadjuvant chemotherapy in ER+ HER2− breast cancer: response prediction based on immunohistochemical and molecular characteristics von Lips, E. H., Mulder, L., de Ronde, J. J., Mandjes, I. A. M., Vincent, A., Vrancken Peeters, M. T. F. D., Nederlof, P. M., Wesseling, J., Rodenhuis, S.

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AACR Project GENIE: Powering Precision Medicine through an International Consortium von André, Fabrice, Arnedos, Monica, Baras, Alexander S., Baselga, José, Bedard, Philippe L., Berger, Michael F., Bierkens, Mariska, Calvo, Fabien, Cerami, Ethan, Chakravarty, Debyani, Dang, Kristen K., Davidson, Nancy E., Del Vecchio Fitz, Catherine, Dogan, Semih, DuBois, Raymond N., Ducar, Matthew D., Futreal, P. Andrew, Gao, Jianjiong, Garcia, Francisco, Gardos, Stu, Gocke, Christopher D., Gross, Benjamin E., Guinney, Justin, Heins, Zachary J., Hintzen, Stephanie, Horlings, Hugo, Hudeček, Jan, Hyman, David M., Kamel-Reid, Suzanne, Kandoth, Cyriac, Kinyua, Walter, Kumari, Priti, Kundra, Ritika, Ladanyi, Marc, Lefebvre, Céline, LeNoue-Newton, Michele L., Lepisto, Eva M., Levy, Mia A., Lindeman, Neal I., Lindsay, James, Liu, David, Lu, Zhibin, MacConaill, Laura E., Maurer, Ian, Maxwell, David S., Meijer, Gerrit A., Meric-Bernstam, Funda, Micheel, Christine M., Miller, Clinton, Mills, Gordon, Moore, Nathanael D., Nederlof, Petra M., Omberg, Larsson, Orechia, John A., Park, Ben Ho, Pugh, Trevor J., Reardon, Brendan, Rollins, Barrett J., Routbort, Mark J., Sawyers, Charles L., Schrag, Deborah, Schultz, Nikolaus, Shaw, Kenna R Mills, Shivdasani, Priyanka, Siu, Lillian L., Solit, David B., Sonke, Gabe S., Soria, Jean Charles, Sripakdeevong, Parin, Stickle, Natalie H., Stricker, Thomas P., Sweeney, Shawn M., Taylor, Barry S., ten Hoeve, Jelle J., Thomas, Stacy B., Van Allen, Eliezer M., Van 'T Veer, Laura J., van de Velde, Tony, van Tinteren, Harm, Velculescu, Victor E., Virtanen, Carl, Voest, Emile E., Wang, Lucy L., Wathoo, Chetna, Watt, Stuart, Yu, Celeste, Yu, Thomas V., Yu, Emily, Zehir, Ahmet, Zhang, Hongxin

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Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response von Lips, Esther H, Michaut, Magali, Hoogstraat, Marlous, Mulder, Lennart, Besselink, Nicolle J M, Koudijs, Marco J, Cuppen, Edwin, Voest, Emile E, Bernards, Rene, Nederlof, Petra M, Wesseling, Jelle, Rodenhuis, Sjoerd, Wessels, Lodewyk F A

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High Incidence of Protein-Truncating TP53 Mutations in BRCA1-Related Breast Cancer von HOLSTEGE, Henne, JOOSSE, Simon A, VAN OOSTROM, Conny Th. M, NEDERLOF, Petra M, DE VRIES, Annemieke, JONKERS, Jos

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Comprehensive routine diagnostic screening to identify predictive mutations, gene amplifications, and microsatellite instability in FFPE tumor material von Steeghs, Elisabeth M. P., Kroeze, Leonie I., Tops, Bastiaan B. J., van Kempen, Leon C., ter Elst, Arja, Kastner-van Raaij, Annemiek W. M., Hendriks-Cornelissen, Sandra J. B., Hermsen, Mandy J. W., Jansen, Erik A. M., Nederlof, Petra M., Schuuring, Ed, Ligtenberg, Marjolijn J. L., Eijkelenboom, Astrid

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A multiplex PCR predictor for aCGH success of FFPE samples von VAN BEERS, E. H, JOOSSE, S. A, LIGTENBERG, M. J, FLES, R, HOGERVORST, F. B. L, VERHOEF, S, NEDERLOF, P. M

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BRCAness digitalMLPA profiling predicts benefit of intensified platinum-based chemotherapy in triple-negative and luminal-type breast cancer von Lips, Esther H., Benard-Slagter, Anne, Opdam, Mark, Scheerman, Caroline E., Wesseling, Jelle, Hogervorst, Frans B. L., Linn, Sabine C., Savola, Suvi, Nederlof, Petra M.

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Recommendations for the clinical interpretation and reporting of copy number gains using gene panel NGS analysis in routine diagnostics von Eijkelenboom, Astrid, Tops, Bastiaan B. J., van den Berg, Anke, van den Brule, Adrianus J. C., Dinjens, Winand N. M., Dubbink, Hendrikus J., ter Elst, Arja, Geurts-Giele, Willemina R. R., Groenen, Patricia J. T. A., Groenendijk, Floris H., Heideman, Daniëlle A. M., Huibers, Manon M. H., Huijsmans, Cornelis J. J., Jeuken, Judith W. M., van Kempen, Léon C., Korpershoek, Esther, Kroeze, Leonie I., de Leng, Wendy W. J., van Noesel, Carel J. M., Speel, Ernst-Jan M., Vogel, Maartje J., van Wezel, Tom, Nederlof, Petra M., Schuuring, Ed, Ligtenberg, Marjolijn J. L.

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BRCA1 tumour suppression occurs via heterochromatin-mediated silencing von Zhu, Quan, Pao, Gerald M., Huynh, Alexis M., Suh, Hoonkyo, Tonnu, Nina, Nederlof, Petra M., Gage, Fred H., Verma, Inder M.

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Long-term outcomes of young, node-negative, chemotherapy-naïve, triple-negative breast cancer patients according to BRCA1 status von Wang, Yuwei, Dackus, Gwen M H E, Rosenberg, Efraim H, Cornelissen, Sten, de Boo, Leonora W, Broeks, Annegien, Brugman, Wim, Chan, Terry W S, van Diest, Paul J, Hauptmann, Michael, Ter Hoeve, Natalie D, Isaeva, Olga I, de Jong, Vincent M T, Jóźwiak, Katarzyna, Kluin, Roelof J C, Kok, Marleen, Koop, Esther, Nederlof, Petra M, Opdam, Mark, Schouten, Philip C, Siesling, Sabine, van Steenis, Charlaine, Voogd, Adri C, Vreuls, Willem, Salgado, Roberto F, Linn, Sabine C, Schmidt, Marjanka K

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Indicators of homologous recombination deficiency in breast cancer and association with response to neoadjuvant chemotherapy von Lips, E.H., Mulder, L., Hannemann, J., Laddach, N., Vrancken Peeters, M.T.F.D., van de Vijver, M.J., Wesseling, J., Nederlof, P.M., Rodenhuis, S.

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The Drug Rediscovery protocol facilitates the expanded use of existing anticancer drugs von van der Velden, D. L., Hoes, L. R., van der Wijngaart, H., van Berge Henegouwen, J. M., van Werkhoven, E., Roepman, P., Schilsky, R. L., de Leng, W. W. J., Huitema, A. D. R., Nuijen, B., Nederlof, P. M., van Herpen, C. M. L., de Groot, D. J. A., Devriese, L. A., Hoeben, A., de Jonge, M. J. A., Chalabi, M., Smit, E. F., de Langen, A. J., Mehra, N., Labots, M., Kapiteijn, E., Sleijfer, S., Cuppen, E., Verheul, H. M. W., Gelderblom, H., Voest, E. E.

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Quantitative copy number analysis by Multiplex Ligation-dependent Probe Amplification (MLPA) of BRCA1-associated breast cancer regions identifies BRCAness von Lips, Esther H, Laddach, Nadja, Savola, Suvi P, Vollebergh, Marieke A, Oonk, Anne M M, Imholz, Alex L T, Wessels, Lodewyk F A, Wesseling, Jelle, Nederlof, Petra M, Rodenhuis, Sjoerd

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BRCA1 -Mutated Estrogen Receptor-Positive Breast Cancer Shows BRCAness, Suggesting Sensitivity to Drugs Targeting Homologous Recombination Deficiency von Lips, Esther H, Debipersad, Rashmie D, Scheerman, Caroline E, Mulder, Lennart, Sonke, Gabe S, van der Kolk, Lizet E, Wesseling, Jelle, Hogervorst, Frans B L, Nederlof, Petra M

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