Forest tree genomics: growing resources and applications von Neale, David B, Kremer, Antoine

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Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae) von Eckert, Andrew J, van Heerwaarden, Joost, Wegrzyn, Jill L, Nelson, C Dana, Ross-Ibarra, Jeffrey, González-Martínez, Santíago C, Neale, David B

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Association genetics of complex traits in conifers von Neale, David B, Savolainen, Outi

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Sequencing and assembly of the 22-gb loblolly pine genome von Zimin, Aleksey, Stevens, Kristian A, Crepeau, Marc W, Holtz-Morris, Ann, Koriabine, Maxim, Marçais, Guillaume, Puiu, Daniela, Roberts, Michael, Wegrzyn, Jill L, de Jong, Pieter J, Neale, David B, Salzberg, Steven L, Yorke, James A, Langley, Charles H

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The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non‐structural polyphenols von Martínez‐García, Pedro J., Crepeau, Marc W., Puiu, Daniela, Gonzalez‐Ibeas, Daniel, Whalen, Jeanne, Stevens, Kristian A., Paul, Robin, Butterfield, Timothy S., Britton, Monica T., Reagan, Russell L., Chakraborty, Sandeep, Walawage, Sriema L., Vasquez‐Gross, Hans A., Cardeno, Charis, Famula, Randi A., Pratt, Kevin, Kuruganti, Sowmya, Aradhya, Mallikarjuna K., Leslie, Charles A., Dandekar, Abhaya M., Salzberg, Steven L., Wegrzyn, Jill L., Langley, Charles H., Neale, David B.

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A Reference Genome Sequence for Giant Sequoia von Scott, Alison D, Zimin, Aleksey V, Puiu, Daniela, Workman, Rachael, Britton, Monica, Zaman, Sumaira, Caballero, Madison, Read, Andrew C, Bogdanove, Adam J, Burns, Emily, Wegrzyn, Jill, Timp, Winston, Salzberg, Steven L, Neale, David B

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Sequence of the Sugar Pine Megagenome von Stevens, Kristian A, Wegrzyn, Jill L, Zimin, Aleksey, Puiu, Daniela, Crepeau, Marc, Cardeno, Charis, Paul, Robin, Gonzalez-Ibeas, Daniel, Koriabine, Maxim, Holtz-Morris, Ann E, Martínez-García, Pedro J, Sezen, Uzay U, Marçais, Guillaume, Jermstad, Kathy, McGuire, Patrick E, Loopstra, Carol A, Davis, John M, Eckert, Andrew, de Jong, Pieter, Yorke, James A, Salzberg, Steven L, Neale, David B, Langley, Charles H

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Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.) von Bernard, Anthony, Marrano, Annarita, Donkpegan, Armel, Brown, Patrick J, Leslie, Charles A, Neale, David B, Lheureux, Fabrice, Dirlewanger, Elisabeth

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A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource von Mosca, Elena, Cruz, Fernando, Gómez-Garrido, Jèssica, Bianco, Luca, Rellstab, Christian, Brodbeck, Sabine, Csilléry, Katalin, Fady, Bruno, Fladung, Matthias, Fussi, Barbara, Gömöry, Dušan, González-Martínez, Santiago C, Grivet, Delphine, Gut, Marta, Hansen, Ole Kim, Heer, Katrin, Kaya, Zeki, Krutovsky, Konstantin V, Kersten, Birgit, Liepelt, Sascha, Opgenoorth, Lars, Sperisen, Christoph, Ullrich, Kristian K, Vendramin, Giovanni G, Westergren, Marjana, Ziegenhagen, Birgit, Alioto, Tyler, Gugerli, Felix, Heinze, Berthold, Höhn, Maria, Troggio, Michela, Neale, David B

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Deciphering of the Genetic Control of Phenology, Yield, and Pellicle Color in Persian Walnut (Juglans regia L.) von Marrano, Annarita, Sideli, Gina M., Leslie, Charles A., Cheng, Hao, Neale, David B.

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Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae) von Eckert, Andrew J, Bower, Andrew D, Gonzalez-Martinez, Santiago C, Wegrzyn, Jill L, Coop, Graham, Neale, David B

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Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization von Montanari, Sara, Bianco, Luca, Allen, Brian J, Martínez-García, Pedro J, Bassil, Nahla V, Postman, Joseph, Knäbel, Mareike, Kitson, Biff, Deng, Cecilia H, Chagné, David, Crepeau, Marc W, Langley, Charles H, Evans, Kate, Dhingra, Amit, Troggio, Michela, Neale, David B

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Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear (Pyrus communis L.) von Linsmith, Gareth, Rombauts, Stephane, Montanari, Sara, Deng, Cecilia H, Celton, Jean-Marc, Guérif, Philippe, Liu, Chang, Lohaus, Rolf, Zurn, Jason D, Cestaro, Alessandro, Bassil, Nahla V, Bakker, Linda V, Schijlen, Elio, Gardiner, Susan E, Lespinasse, Yves, Durel, Charles-Eric, Velasco, Riccardo, Neale, David B, Chagné, David, Van de Peer, Yves, Troggio, Michela, Bianco, Luca

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Reconstruction of the Largest Pedigree Network for Pear Cultivars and Evaluation of the Genetic Diversity of the USDA-ARS National Pyrus Collection von Montanari, Sara, Postman, Joseph, Bassil, Nahla V, Neale, David B

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The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences von Kovach, Allen, Wegrzyn, Jill L, Parra, Genis, Holt, Carson, Bruening, George E, Loopstra, Carol A, Hartigan, James, Yandell, Mark, Langley, Charles H, Korf, Ian, Neale, David B

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Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation von Wegrzyn, Jill L, Liechty, John D, Stevens, Kristian A, Wu, Le-Shin, Loopstra, Carol A, Vasquez-Gross, Hans A, Dougherty, William M, Lin, Brian Y, Zieve, Jacob J, Martínez-García, Pedro J, Holt, Carson, Yandell, Mark, Zimin, Aleksey V, Yorke, James A, Crepeau, Marc W, Puiu, Daniela, Salzberg, Steven L, Dejong, Pieter J, Mockaitis, Keithanne, Main, Doreen, Langley, Charles H, Neale, David B

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A new genomic tool for walnut (Juglans regia L.): development and validation of the high‐density Axiom™ J. regia 700K SNP genotyping array von Marrano, Annarita, Martínez‐García, Pedro J., Bianco, Luca, Sideli, Gina M., Di Pierro, Erica A., Leslie, Charles A., Stevens, Kristian A., Crepeau, Marc W., Troggio, Michela, Langley, Charles H., Neale, David B.

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High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome von Marrano, Annarita, Britton, Monica, Zaini, Paulo A, Zimin, Aleksey V, Workman, Rachael E, Puiu, Daniela, Bianco, Luca, Pierro, Erica Adele Di, Allen, Brian J, Chakraborty, Sandeep, Troggio, Michela, Leslie, Charles A, Timp, Winston, Dandekar, Abhaya, Salzberg, Steven L, Neale, David B

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Micro- and macro-geographic scale effect on the molecular imprint of selection and adaptation in Norway spruce von Scalfi, Marta, Mosca, Elena, Di Pierro, Erica Adele, Troggio, Michela, Vendramin, Giovanni Giuseppe, Sperisen, Christoph, La Porta, Nicola, Neale, David B

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Association genetics of chemical wood properties in black poplar (Populus nigra) von Guerra, Fernando P., Wegrzyn, Jill L., Sykes, Robert, Davis, Mark F., Stanton, Brian J., Neale, David B.

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