Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution von Nakatani, Yoichiro, Shingate, Prashant, Ravi, Vydianathan, Pillai, Nisha E., Prasad, Aravind, McLysaght, Aoife, Venkatesh, Byrappa

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Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates von Nakatani, Yoichiro, Takeda, Hiroyuki, Kohara, Yuji, Morishita, Shinichi

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Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes von Nakatani, Yoichiro, McLysaght, Aoife

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An integrative epigenomic approach identifies ELF3 as an oncogenic regulator in ASCL1‐positive neuroendocrine carcinoma von Horie, Masafumi, Tanaka, Hidenori, Suzuki, Masami, Sato, Yoshihiko, Takata, So, Takai, Erina, Miyashita, Naoya, Saito, Akira, Nakatani, Yoichiro, Yachida, Shinichi

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Comprehensive Genomic Profiling of Neuroendocrine Carcinomas of the Gastrointestinal System von Yachida, Shinichi, Totoki, Yasushi, Noë, Michaël, Nakatani, Yoichiro, Horie, Masafumi, Kawasaki, Kenta, Nakamura, Hiromi, Saito-Adachi, Mihoko, Suzuki, Masami, Takai, Erina, Hama, Natsuko, Higuchi, Ryota, Hirono, Seiko, Shiba, Satoshi, Kato, Mamoru, Furukawa, Eisaku, Arai, Yasuhito, Rokutan, Hirofumi, Hashimoto, Taiki, Mitsunaga, Shuichi, Kanda, Mitsuro, Tanaka, Hidenori, Takata, So, Shimomura, Ayaka, Oshima, Minoru, Hackeng, Wenzel M, Okumura, Tomoyuki, Okano, Keiichi, Yamamoto, Masakazu, Yamaue, Hiroki, Morizane, Chigusa, Arihiro, Koji, Furukawa, Toru, Sato, Toshiro, Kiyono, Tohru, Brosens, Lodewijk A A, Wood, Laura D, Hruban, Ralph H, Shibata, Tatsuhiro

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Publisher Correction: Reconstruction of proto-vertebrate, protocyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution von Nakatani, Yoichiro, Shingate, Prashant, Ravi, Vydianathan, Pillai, Nisha E., Prasad, Aravind, McLysaght, Aoife, Venkatesh, Byrappa

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CTCF looping is established during gastrulation in medaka embryos von Nakamura, Ryohei, Motai, Yuichi, Kumagai, Masahiko, Wike, Candice L, Nishiyama, Haruyo, Nakatani, Yoichiro, Durand, Neva C, Kondo, Kaori, Kondo, Takashi, Tsukahara, Tatsuya, Shimada, Atsuko, Cairns, Bradley R, Aiden, Erez Lieberman, Morishita, Shinichi, Takeda, Hiroyuki

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Variability in non-tumor areas of colorectal cancer patients as revealed by endoscopic intestinal step biopsies von Ikuta, Shoko, Saito, Yutaka, Takata, So, Nakatani, Yoichiro, Nagatomo, Izumi, Shiba, Satoshi, Takeda, Yoshito, Totoki, Yasushi, Mizutani, Sayaka, Sunakawa, Hironori, Ikematsu, Hiroaki, Takamaru, Hiroyuki, Kumanogoh, Atsushi, Yachida, Shinichi

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Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites von Sasaki, Shin, Mello, Cecilia C, Shimada, Atsuko, Nakatani, Yoichiro, Hashimoto, Shin-ichi, Ogawa, Masako, Matsushima, Kouji, Gu, Sam Guoping, Kasahara, Masahiro, Ahsan, Budrul, Sasaki, Atsushi, Saito, Taro, Suzuki, Yutaka, Sugano, Sumio, Kohara, Yuji, Takeda, Hiroyuki, Fire, Andrew, Morishita, Shinichi

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High-dimensional and large-scale phenotyping of yeast mutants von Ohya, Y, Sese, J, Yukawa, M, Sano, F, Nakatani, Y, Saito, T.L, Saka, A, Fukuda, T, Ishihara, S, Oka, S

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Macrosynteny analysis shows the absence of ancient whole-genome duplication in lepidopteran insects von Nakatania, Yoichiro, McLysaght, Aoife

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Genome-wide profiling of DNA methylation in human cancer cells von Ogoshi, Katsumi, Hashimoto, Shin-ichi, Nakatani, Yoichiro, Qu, Wei, Oshima, Kenshiro, Tokunaga, Katsushi, Sugano, Sumio, Hattori, Masahira, Morishita, Shinichi, Matsushima, Kouji

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Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species von Nakatani, Yoichiro, Mello, Cecilia C, Hashimoto, Shin-Ichi, Shimada, Atsuko, Nakamura, Ryohei, Tsukahara, Tatsuya, Qu, Wei, Yoshimura, Jun, Suzuki, Yutaka, Sugano, Sumio, Takeda, Hiroyuki, Fire, Andrew, Morishita, Shinichi

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High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer von Hashimoto, Shin-ichi, Qu, Wei, Ahsan, Budrul, Ogoshi, Katsumi, Sasaki, Atsushi, Nakatani, Yoichiro, Lee, Yongjun, Ogawa, Masako, Ametani, Akio, Suzuki, Yutaka, Sugano, Sumio, Lee, Clarence C, Nutter, Robert C, Morishita, Shinichi, Matsushima, Kouji

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Diversity of Ca2+-Induced Morphology Revealed by Morphological Phenotyping of Ca2+-Sensitive Mutants of Saccharomyces cerevisiae von Ohnuki, Shinsuke, Nogami, Satoru, Kanai, Hanako, Hirata, Dai, Nakatani, Yoichiro, Morishita, Shinichi, Ohya, Yoshikazu

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The medaka draft genome and insights into vertebrate genome evolution von Toyoda, Atsushi, Lee, Yongjun, Ohta, Fumiko, Naruse, Kiyoshi, Fujiyama, Asao, Sasaki, Shin, Sasaki, Takashi, Yang, Jun, Morishita, Shinichi, Qu, Wei, Sugano, Sumio, Nagayasu, Yukinobu, Kobayashi, Daisuke, Morishita, Tomomi, Sakaizumi, Mitsuru, Ohishi, Kazuko, Shimada, Atsuko, Asakawa, Shuichi, Doi, Koichiro, Haga, Shinobu, Endo, Tomoko, Nakatani, Yoichiro, Matsushima, Kouji, Nomoto, Hisayo, Jindo, Tomoko, Hashimoto, Shin-ichi, Yamada, Tomoyuki, Ahsan, Budrul, Shin-I, Tadasu, Nogata, Keiko, Kasahara, Masahiro, Shimizu, Atsushi, Kasai, Yasuhiro, Narita, Takanori, Takeda, Hiroyuki, Kuroki, Yoko, Kohara, Yuji, Shimizu, Nobuyoshi

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PCDHGC3 hypermethylation as a potential biomarker of intestinal neuroendocrine carcinomas von Cubiella, Tamara, Celada, Lucía, San‐Juan‐Guardado, Jaime, Rodríguez‐Aguilar, Raúl, Suárez‐Priede, Álvaro, Poch, María, Dominguez, Francisco, Fernández‐Vega, Iván, Montero‐Pavón, Pedro, Fraga, Mario F, Nakatani, Yoichiro, Takata, So, Yachida, Shinichi, Valdés, Nuria, Chiara, María‐Dolores

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The genome of a lepidopteran model insect, the silkworm Bombyx mori von The International Silkworm Genome Consortium

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Coordinated changes in DNA methylation in antigen-specific memory CD4 T cells von Hashimoto, Shin-ichi, Ogoshi, Katsumi, Sasaki, Atsushi, Abe, Jun, Qu, Wei, Nakatani, Yoichiro, Ahsan, Budrul, Oshima, Kenshiro, Shand, Francis H W, Ametani, Akio, Suzuki, Yutaka, Kaneko, Shuichi, Wada, Takashi, Hattori, Masahira, Sugano, Sumio, Morishita, Shinichi, Matsushima, Kouji

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Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns von Qu, Wei, Hashimoto, Shin-ichi, Shimada, Atsuko, Nakatani, Yoichiro, Ichikawa, Kazuki, Saito, Taro L, Ogoshi, Katsumi, Matsushima, Kouji, Suzuki, Yutaka, Sugano, Sumio, Takeda, Hiroyuki, Morishita, Shinichi

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