A novel approach of dynamic cross correlation analysis on molecular dynamics simulations and its application to Ets1 dimer-DNA complex von Kasahara, Kota, Fukuda, Ikuo, Nakamura, Haruki

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Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive von Burley, Stephen K., Berman, Helen M., Kleywegt, Gerard J., Markley, John L., Nakamura, Haruki, Velankar, Sameer

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Announcement of new Editorial Board members von Nakamura, Haruki

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Announcement of BPPB paper awards 2022 von Nakamura, Haruki

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Protein Data Bank: the single global archive for 3D macromolecular structure data von Burley, Stephen K, Berman, Helen M, Bhikadiya, Charmi, Bi, Chunxiao, Chen, Li, Costanzo, Luigi Di, Christie, Cole, Duarte, Jose M, Dutta, Shuchismita, Feng, Zukang, Ghosh, Sutapa, Goodsell, David S, Green, Rachel Kramer, Guranovic, Vladimir, Guzenko, Dmytro, Hudson, Brian P, Liang, Yuhe, Lowe, Robert, Peisach, Ezra, Periskova, Irina, Randle, Chris, Rose, Alexander, Sekharan, Monica, Shao, Chenghua, Tao, Yi-Ping, Valasatava, Yana, Voigt, Maria, Westbrook, John, Young, Jasmine, Zardecki, Christine, Zhuravleva, Marina, Kurisu, Genji, Nakamura, Haruki, Kengaku, Yumiko, Cho, Hasumi, Sato, Junko, Kim, Ju Yaen, Ikegawa, Yasuyo, Nakagawa, Atsushi, Yamashita, Reiko, Kudou, Takahiro, Bekker, Gert-Jan, Suzuki, Hirofumi, Iwata, Takeshi, Yokochi, Masashi, Kobayashi, Naohiro, Fujiwara, Toshimichi, Velankar, Sameer, Kleywegt, Gerard J, Anyango, Stephen, Armstrong, David R, Berrisford, John M, Conroy, Matthew J, Dana, Jose M, Deshpande, Mandar, Gane, Paul, Gáborová, Romana, Gupta, Deepti, Gutmanas, Aleksandras, Koča, Jaroslav, Mak, Lora, Mir, Saqib, Mukhopadhyay, Abhik, Nadzirin, Nurul, Nair, Sreenath, Patwardhan, Ardan, Paysan-Lafosse, Typhaine, Pravda, Lukas, Salih, Osman, Sehnal, David, Varadi, Mihaly, Vařeková, Radka, Markley, John L, Hoch, Jeffrey C, Romero, Pedro R, Baskaran, Kumaran, Maziuk, Dimitri, Ulrich, Eldon L, Wedell, Jonathan R, Yao, Hongyang, Livny, Miron, Ioannidis, Yannis E

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Announcement of BPPB paper awards 2021 von Nakamura, Haruki

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Improve publishing procedures of Biophysics and Physicobiology von Nakamura, Haruki

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Prediction of Synthetic Accessibility Based on Commercially Available Compound Databases von Fukunishi, Yoshifumi, Kurosawa, Takashi, Mikami, Yoshiaki, Nakamura, Haruki

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Multidimensional virtual‐system coupled canonical molecular dynamics to compute free‐energy landscapes of peptide multimer assembly von Hayami, Tomonori, Higo, Junichi, Nakamura, Haruki, Kasahara, Kota

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Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures von Kinjo, Akira R, Bekker, Gert-Jan, Suzuki, Hirofumi, Tsuchiya, Yuko, Kawabata, Takeshi, Ikegawa, Yasuyo, Nakamura, Haruki

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Phosphorylation of an intrinsically disordered region of Ets1 shifts a multi-modal interaction ensemble to an auto-inhibitory state von Kasahara, Kota, Shiina, Masaaki, Higo, Junichi, Ogata, Kazuhiro, Nakamura, Haruki

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3D Flexible Alignment Using 2D Maximum Common Substructure: Dependence of Prediction Accuracy on Target-Reference Chemical Similarity von Kawabata, Takeshi, Nakamura, Haruki

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Density functional study of porphyrin distortion effects on redox potential of heme von Imada, Yasuhiro, Nakamura, Haruki, Takano, Yu

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Validation of Structures in the Protein Data Bank von Gore, Swanand, Sanz García, Eduardo, Hendrickx, Pieter M.S., Gutmanas, Aleksandras, Westbrook, John D., Yang, Huanwang, Feng, Zukang, Baskaran, Kumaran, Berrisford, John M., Hudson, Brian P., Ikegawa, Yasuyo, Kobayashi, Naohiro, Lawson, Catherine L., Mading, Steve, Mak, Lora, Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Peisach, Ezra, Sahni, Gaurav, Sekharan, Monica R., Sen, Sanchayita, Shao, Chenghua, Smart, Oliver S., Ulrich, Eldon L., Yamashita, Reiko, Quesada, Martha, Young, Jasmine Y., Nakamura, Haruki, Markley, John L., Berman, Helen M., Burley, Stephen K., Velankar, Sameer, Kleywegt, Gerard J.

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A Robust, Symmetric Operator-Composition Integrator for the Berendsen Temperature-Control Molecular Dynamics Equation von Fukuda, Ikuo, Queyroy, Séverine, Nakamura, Haruki

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Molecular dynamics scheme for precise estimation of electrostatic interaction via zero-dipole summation principle von Fukuda, Ikuo, Yonezawa, Yasushige, Nakamura, Haruki

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HitPredict: a database of quality assessed protein-protein interactions in nine species von Patil, Ashwini, Nakai, Kenta, Nakamura, Haruki

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Revisiting antibody modeling assessment for CDR-H3 loop von Nishigami, Hiroshi, Kamiya, Narutoshi, Nakamura, Haruki

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Depolarizing Effects in Hydrogen Bond Energy in 310-Helices Revealed by Quantum Chemical Analysis von Kondo, Hiroko X., Nakamura, Haruki, Takano, Yu

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Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB von Suzuki, Hirofumi, Kawabata, Takeshi, Nakamura, Haruki

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