Large Variation in the Ratio of Mitochondrial to Nuclear Mutation Rate across Animals: Implications for Genetic Diversity and the Use of Mitochondrial DNA as a Molecular Marker von Allio, Remi, Donega, Stefano, Galtier, Nicolas, Nabholz, Benoit

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MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics von Allio, Rémi, Schomaker‐Bastos, Alex, Romiguier, Jonathan, Prosdocimi, Francisco, Nabholz, Benoit, Delsuc, Frédéric

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Body mass-corrected molecular rate for bird mitochondrial DNA von Nabholz, Benoit, Lanfear, Robert, Fuchs, Jérome

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Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants von Allio, Rémi, Nabholz, Benoit, Wanke, Stefan, Chomicki, Guillaume, Pérez-Escobar, Oscar A., Cotton, Adam M., Clamens, Anne-Laure, Kergoat, Gaël J., Sperling, Felix A. H., Condamine, Fabien L.

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The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals von Nabholz, Benoit, Glémin, Sylvain, Galtier, Nicolas

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Influence of Recombination and GC-biased Gene Conversion on the Adaptive and Nonadaptive Substitution Rate in Mammals versus Birds von Rousselle, Marjolaine, Laverré, Alexandre, Figuet, Emeric, Nabholz, Benoit, Galtier, Nicolas

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Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals von Rousselle, Marjolaine, Simion, Paul, Tilak, Marie-Ka, Figuet, Emeric, Nabholz, Benoit, Galtier, Nicolas

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Overestimation of the adaptive substitution rate in fluctuating populations von Rousselle, Marjolaine, Mollion, Maeva, Nabholz, Benoit, Bataillon, Thomas, Galtier, Nicolas

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Incomplete lineage sorting explains the low performance of DNA barcoding in a radiation of four species of Western European grasshoppers (Orthoptera: Acrididae: Chorthippus) von Nabholz, Benoit

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Exon capture museomics deciphers the nine-banded armadillo species complex and identifies a new species endemic to the Guiana Shield von Barthe, Mathilde, Rancilhac, Loïs, Arteaga, Maria C, Feijó, Anderson, Tilak, Marie-Ka, Justy, Fabienne, Loughry, W J, McDonough, Colleen M, de Thoisy, Benoit, Catzeflis, François, Billet, Guillaume, Hautier, Lionel, Nabholz, Benoit, Delsuc, Frédéric

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High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox von Allio, Rémi, Tilak, Marie-Ka, Scornavacca, Celine, Avenant, Nico L, Kitchener, Andrew C, Corre, Erwan, Nabholz, Benoit, Delsuc, Frédéric

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Bio++: efficient extensible libraries and tools for computational molecular evolution von Guéguen, Laurent, Gaillard, Sylvain, Boussau, Bastien, Gouy, Manolo, Groussin, Mathieu, Rochette, Nicolas C, Bigot, Thomas, Fournier, David, Pouyet, Fanny, Cahais, Vincent, Bernard, Aurélien, Scornavacca, Céline, Nabholz, Benoît, Haudry, Annabelle, Dachary, Loïc, Galtier, Nicolas, Belkhir, Khalid, Dutheil, Julien Y

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Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap von Gayral, Philippe, Melo-Ferreira, José, Glémin, Sylvain, Bierne, Nicolas, Carneiro, Miguel, Nabholz, Benoit, Lourenco, Joao M, Alves, Paulo C, Ballenghien, Marion, Faivre, Nicolas, Belkhir, Khalid, Cahais, Vincent, Loire, Etienne, Bernard, Aurélien, Galtier, Nicolas

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Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima) von Nabholz, Benoit, Sarah, Gautier, Sabot, François, Ruiz, Manuel, Adam, Hélène, Nidelet, Sabine, Ghesquière, Alain, Santoni, Sylvain, David, Jacques, Glémin, Sylvain

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Determination of Mitochondrial Genetic Diversity in Mammals von Nabholz, Benoit, Mauffrey, Jean-Francois, Bazin, Eric, Galtier, Nicolas, Glemin, Sylvain

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Response to Kratochvíl and Rovatsos von Leroy, Thibault, Nabholz, Benoit

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Evolutionary forces affecting synonymous variations in plant genomes von Clément, Yves, Sarah, Gautier, Holtz, Yan, Homa, Felix, Pointet, Stéphanie, Contreras, Sandy, Nabholz, Benoit, Sabot, François, Sauné, Laure, Ardisson, Morgane, Bacilieri, Roberto, Besnard, Guillaume, Berger, Angélique, Cardi, Céline, De Bellis, Fabien, Fouet, Olivier, Jourda, Cyril, Khadari, Bouchaib, Lanaud, Claire, Leroy, Thierry, Pot, David, Sauvage, Christopher, Scarcelli, Nora, Tregear, James, Vigouroux, Yves, Yahiaoui, Nabila, Ruiz, Manuel, Santoni, Sylvain, Labouisse, Jean-Pierre, Pham, Jean-Louis, David, Jacques, Glémin, Sylvain

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Obtaining mtDNA genomes from next-generation transcriptome sequencing: A case study on the basal Passerida (Aves: Passeriformes) phylogeny von Nabholz, Benoit, Jarvis, Erich D., Ellegren, Hans

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Gene expression, chromosome heterogeneity and the fast-X effect in mammals von Nguyen, Linh-Phuong, Galtier, Nicolas, Nabholz, Benoit

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Life History Traits, Protein Evolution, and the Nearly Neutral Theory in Amniotes von Figuet, Emeric, Nabholz, Benoît, Bonneau, Manon, Mas Carrio, Eduard, Nadachowska-Brzyska, Krystyna, Ellegren, Hans, Galtier, Nicolas

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