Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database von Allard, Marc W, Strain, Errol, Melka, David, Bunning, Kelly, Musser, Steven M, Brown, Eric W, Timme, Ruth

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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water von Maguire, Meghan, Kase, Julie A., Roberson, Dwayne, Muruvanda, Tim, Brown, Eric W., Allard, Marc, Musser, Steven M., Gonzalez-Escalona, Narjol

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On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004 von Allard, Marc W, Luo, Yan, Strain, Errol, Pettengill, James, Timme, Ruth, Wang, Charles, Li, Cong, Keys, Christine E, Zheng, Jie, Stones, Robert, Wilson, Mark R, Musser, Steven M, Brown, Eric W

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High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach von Allard, Marc W, Luo, Yan, Strain, Errol, Li, Cong, Keys, Christine E, Son, Insook, Stones, Robert, Musser, Steven M, Brown, Eric W

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Development of a targeted amplicon sequencing method for genotyping Cyclospora cayetanensis from fresh produce and clinical samples with enhanced genomic resolution and sensitivity von Leonard, Susan R, Mammel, Mark K, Gharizadeh, Baback, Almeria, Sonia, Ma, Zhihai, Lipman, David J, Torrence, Mary E, Wang, Chunlin, Musser, Steven M

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Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water von Maguire, Meghan, Ramachandran, Padmini, Tallent, Sandra, Mammel, Mark K., Brown, Eric W., Allard, Marc W., Musser, Steven M., González-Escalona, Narjol

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Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters von Timme, Ruth E, Pettengill, James B, Allard, Marc W, Strain, Errol, Barrangou, Rodolphe, Wehnes, Chris, Van Kessel, Joann S, Karns, Jeffrey S, Musser, Steven M, Brown, Eric W

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Evaluation of the Increased Genetic Resolution and Utility for Source Tracking of a Recently Developed Method for Genotyping Cyclospora cayetanensis von Leonard, Susan R, Mammel, Mark K, Almeria, Sonia, Gebru, Solomon T, Jacobson, David K, Peterson, Anna C, Barratt, Joel L N, Musser, Steven M

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Analysis of Coffee for the Presence of Acrylamide by LC-MS/MS von Andrzejewski, Denis, Roach, John A. G, Gay, Martha L, Musser, Steven M

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Metagenomic survey of agricultural water using long read sequencing: Considerations for a successful analysis von Maguire, Meghan, Kase, Julie A., Brown, Eric W., Allard, Marc W., Musser, Steven M., González-Escalona, Narjol

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Experimental factors affecting the quality and reproducibility of MALDI TOF mass spectra obtained from whole bacteria cells von Williams, Tracie L, Andrzejewski, Denis, Lay, Jackson O, Musser, Steven M

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Genomic perspectives on foodborne illness von Lipman, David J., Cherry, Joshua L., Strain, Errol, Agarwala, Richa, Musser, Steven M.

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Draft Genome Sequences of 21 Salmonella enterica Serovar Enteritidis Strains von Timme, Ruth E, Allard, Marc W, Luo, Yan, Strain, Errol, Pettengill, James, Wang, Charles, Li, Cong, Keys, Christine E, Zheng, Jie, Stones, Robert, Wilson, Mark R, Musser, Steven M, Brown, Eric W

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The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica von Pettengill, James B, Timme, Ruth E, Barrangou, Rodolphe, Toro, Magaly, Allard, Marc W, Strain, Errol, Musser, Steven M, Brown, Eric W

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Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States von Stevens, Eric L, Carleton, Heather A, Beal, Jennifer, Tillman, Glenn E, Lindsey, Rebecca L, Lauer, A C, Pightling, Arthur, Jarvis, Karen G, Ottesen, Andrea, Ramachandran, Padmini, Hintz, Leslie, Katz, Lee S, Folster, Jason P, Whichard, Jean M, Trees, Eija, Timme, Ruth E, McDERMOTT, Patrick, Wolpert, Beverly, Bazaco, Michael, Zhao, Shaohua, Lindley, Sabina, Bruce, Beau B, Griffin, Patricia M, Brown, Eric, Allard, Marc, Tallent, Sandra, Irvin, Kari, Hoffmann, Maria, Wise, Matt, Tauxe, Robert, Gerner-Smidt, Peter, Simmons, Mustafa, Kissler, Bonnie, Defibaugh-Chavez, Stephanie, Klimke, William, Agarwala, Richa, Lindsay, James, Cook, Kimberly, Austerman, Suelee Robbe, Goldman, David, McGARRY, Sherri, Hale, Kis Robertson, Dessai, Uday, Musser, Steven M, Braden, Chris

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Detection, Confirmation, and Quantification of Staphylococcal Enterotoxin B in Food Matrixes Using Liquid Chromatography−Mass Spectrometry von Callahan, John H, Shefcheck, Kevin J, Williams, Tracie L, Musser, Steven M

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Identification of a Salmonellosis Outbreak by Means of Molecular Sequencing von Lienau, E. Kurt, Cao, Guojie, Stones, Robert, Strain, Errol, Meng, Jianghong, Wang, Charles, Zheng, Jie, Ottesen, Andrea R, Keys, Christine E, Hammack, Thomas S, Musser, Steven M, Brown, Eric W, Allard, Marc W

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Prevalence of Salmonella in 11 Spices Offered for Sale from Retail Establishments and in Imported Shipments Offered for Entry to the United States von Zhang, Guodong, Hu, Lijun, Pouillot, Régis, Tatavarthy, Aparna, Doren, Jane M Van, Kleinmeier, Daria, Ziobro, George C, Melka, David, Wang, Hua, Brown, Eric W, Strain, Errol, Bunning, Vincent K, Musser, Steven M, Hammack, Thomas S

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Survey of Foodborne Pathogens, Aerobic Plate Counts, Total Coliform Counts, and Escherichia coli Counts in Leafy Greens, Sprouts, and Melons Marketed in the United States von Zhang, Guodong, Chen, Yi, Hu, Lijun, Melka, David, Wang, Hua, Laasri, Anna, Brown, Eric W, Strain, Errol, Allard, Marc, Bunning, Vincent K, Parish, Mickey, Musser, Steven M, Hammack, Thomas S

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Platform for Identification of Salmonella Serovar Differentiating Bacterial Proteins by Top-Down Mass Spectrometry: S. Typhimurium vs S. Heidelberg von McFarland, Melinda A, Andrzejewski, Denis, Musser, Steven M, Callahan, John H

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