Genome Reduction Is Associated with Bacterial Pathogenicity across Different Scales of Temporal and Ecological Divergence von Murray, Gemma G R, Charlesworth, Jane, Miller, Eric L, Casey, Michael J, Lloyd, Catrin T, Gottschalk, Marcelo, Tucker, Alexander W (Dan), Welch, John J, Weinert, Lucy A

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Natural selection shaped the rise and fall of passenger pigeon genomic diversity von Murray, Gemma G. R., Soares, André E. R., Novak, Ben J., Schaefer, Nathan K., Cahill, James A., Baker, Allan J., Demboski, John R., Doll, Andrew, Da Fonseca, Rute R., Fulton, Tara L., Gilbert, M. Thomas P., Heintzman, Peter D., Letts, Brandon, McIntosh, George, O’Connell, Brendan L., Peck, Mark, Pipes, Marie-Lorraine, Rice, Edward S., Santos, Kathryn M., Sohrweide, A. Gregory, Vohr, Samuel H., Corbett-Detig, Russell B., Green, Richard E., Shapiro, Beth

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A detailed life history of a pleistocene steppe bison (Bison priscus) skeleton unearthed in Arctic Alaska von Funck, Juliette, Heintzman, Peter D., Murray, Gemma G.R., Shapiro, Beth, McKinney, Holly, Huchet, Jean-Bernard, Bigelow, Nancy, Druckenmiller, Patrick, Wooller, Matthew J.

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The evolution, diversity, and host associations of rhabdoviruses von Longdon, Ben, Murray, Gemma G. R., Palmer, William J., Day, Jonathan P., Parker, Darren J, Welch, John J., Obbard, Darren J., Jiggins, Francis M.

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The Evolutionary Genomics of Host Specificity in Staphylococcus aureus von Matuszewska, Marta, Murray, Gemma G.R., Harrison, Ewan M., Holmes, Mark A., Weinert, Lucy A.

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Zooming into the structure of the microbiome von Murray, Gemma G. R., Chaguza, Chrispin

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Stable antibiotic resistance and rapid human adaptation in livestock-associated MRSA von Matuszewska, Marta, Murray, Gemma G R, Ba, Xiaoliang, Wood, Rhiannon, Holmes, Mark A, Weinert, Lucy A

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The Phylogeny of Rickettsia Using Different Evolutionary Signatures: How Tree-Like is Bacterial Evolution? von Murray, Gemma G. R., Weinert, Lucy A., Rhule, Emma L., Welch, John J.

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Mutational spectra are associated with bacterial niche von Ruis, Christopher, Weimann, Aaron, Tonkin-Hill, Gerry, Pandurangan, Arun Prasad, Matuszewska, Marta, Murray, Gemma G. R., Lévesque, Roger C., Blundell, Tom L., Floto, R. Andres, Parkhill, Julian

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The effect of genetic structure on molecular dating and tests for temporal signal von Murray, Gemma G. R., Wang, Fang, Harrison, Ewan M., Paterson, Gavin K., Mather, Alison E., Harris, Simon R., Holmes, Mark A., Rambaut, Andrew, Welch, John J., Gilbert, M.

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Mutation rate dynamics reflect ecological change in an emerging zoonotic pathogen von Murray, Gemma G R, Balmer, Andrew J, Herbert, Josephine, Hadjirin, Nazreen F, Kemp, Caroline L, Matuszewska, Marta, Bruchmann, Sebastian, Hossain, A S Md Mukarram, Gottschalk, Marcelo, Tucker, Alexander W, Miller, Eric, Weinert, Lucy A

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Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis von Hadjirin, Nazreen F, Miller, Eric L, Murray, Gemma G R, Yen, Phung L K, Phuc, Ho D, Wileman, Thomas M, Hernandez-Garcia, Juan, Williamson, Susanna M, Parkhill, Julian, Maskell, Duncan J, Zhou, Rui, Fittipaldi, Nahuel, Gottschalk, Marcelo, Tucker, A W Dan, Hoa, Ngo Thi, Welch, John J, Weinert, Lucy A

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Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission von Paterson, Gavin K., Harrison, Ewan M., Murray, Gemma G. R., Welch, John J., Warland, James H., Holden, Matthew T. G., Morgan, Fiona J. E., Ba, Xiaoliang, Koop, Gerrit, Harris, Simon R., Maskell, Duncan J., Peacock, Sharon J., Herrtage, Michael E., Parkhill, Julian, Holmes, Mark A.

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The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs von Murray, Gemma G R, Hossain, A S Md Mukarram, Miller, Eric L, Bruchmann, Sebastian, Balmer, Andrew J, Matuszewska, Marta, Herbert, Josephine, Hadjirin, Nazreen F, Mugabi, Robert, Li, Ganwu, Ferrando, Maria Laura, Fernandes de Oliveira, Isabela Maria, Nguyen, Thanh, Yen, Phung L K, Phuc, Ho D, Zaw Moe, Aung, Su Wai, Thiri, Gottschalk, Marcelo, Aragon, Virginia, Valentin-Weigand, Peter, Heegaard, Peter M H, Vrieling, Manouk, Thein Maw, Min, Thidar Myint, Hnin, Tun Win, Ye, Thi Hoa, Ngo, Bentley, Stephen D, Clavijo, Maria J, Wells, Jerry M, Tucker, Alexander W, Weinert, Lucy A

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Suppressors of RNAi from plant viruses are subject to episodic positive selection von Murray, Gemma G. R., Kosakovsky Pond, Sergei L., Obbard, Darren J.

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A polar bear paleogenome reveals extensive ancient gene flow from polar bears into brown bears von Wang, Ming-Shan, Murray, Gemma G. R., Mann, Daniel, Groves, Pamela, Vershinina, Alisa O., Supple, Megan A., Kapp, Joshua D., Corbett-Detig, Russell, Crump, Sarah E., Stirling, Ian, Laidre, Kristin L., Kunz, Michael, Dalén, Love, Green, Richard E., Shapiro, Beth

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Inference of natural selection from ancient DNA von Dehasque, Marianne, Ávila‐Arcos, María C., Díez‐del‐Molino, David, Fumagalli, Matteo, Guschanski, Katerina, Lorenzen, Eline D., Malaspinas, Anna‐Sapfo, Marques‐Bonet, Tomas, Martin, Michael D., Murray, Gemma G. R., Papadopulos, Alexander S. T., Therkildsen, Nina Overgaard, Wegmann, Daniel, Dalén, Love, Foote, Andrew D.

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Transcriptomics in serum and culture medium reveal shared and differential gene regulation in pathogenic and commensal Streptococcus suis von Fredriksen, Simen, Ruijten, Suzanne D E, Murray, Gemma G R, Juanpere-Borràs, Maria, van Baarlen, Peter, Boekhorst, Jos, Wells, Jerry M

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Absence of Staphylococcus aureus in Wild Populations of Fish Supports a Spillover Hypothesis von Matuszewska, Marta, Dabrowska, Alicja, Murray, Gemma G R, Kett, Steve M, Vick, Andy J A, Banister, Sofie C, Pantoja Munoz, Leonardo, Cunningham, Peter, Welch, John J, Holmes, Mark A, Weinert, Lucy A

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Genomic epidemiology of Streptococcus pneumoniae serotype 16F lineages von Mokaya, Jolynne, Mellor, Kate C, Murray, Gemma G R, Kalizang'oma, Akuzike, Lekhuleni, Cebile, Zar, Heather J, Nicol, Mark P, McGee, Lesley, Bentley, Stephen D, Lo, Stephanie W, Dube, Felix

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