Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering von Ling, Chen, Peabody, George L., Salvachúa, Davinia, Kim, Young-Mo, Kneucker, Colin M., Calvey, Christopher H., Monninger, Michela A., Munoz, Nathalie Munoz, Poirier, Brenton C., Ramirez, Kelsey J., St. John, Peter C., Woodworth, Sean P., Magnuson, Jon K., Burnum-Johnson, Kristin E., Guss, Adam M., Johnson, Christopher W., Beckham, Gregg T.

Volltext

Single-cell isotope tracing reveals functional guilds of bacteria associated with the diatom Phaeodactylum tricornutum von Mayali, Xavier, Samo, Ty J., Kimbrel, Jeff A., Morris, Megan M., Rolison, Kristina, Swink, Courtney, Ramon, Christina, Kim, Young-Mo, Munoz-Munoz, Nathalie, Nicora, Carrie, Purvine, Sam, Lipton, Mary, Stuart, Rhona K., Weber, Peter K.

Volltext

Mapping microhabitats of lignocellulose decomposition by a microbial consortium von Veličković, Marija, Wu, Ruonan, Gao, Yuqian, Thairu, Margaret W., Veličković, Dušan, Munoz, Nathalie, Clendinen, Chaevien S., Bilbao, Aivett, Chu, Rosalie K., Lalli, Priscila M., Zemaitis, Kevin, Nicora, Carrie D., Kyle, Jennifer E., Orton, Daniel, Williams, Sarai, Zhu, Ying, Zhao, Rui, Monroe, Matthew E., Moore, Ronald J., Webb-Robertson, Bobbie-Jo M., Bramer, Lisa M., Currie, Cameron R., Piehowski, Paul D., Burnum-Johnson, Kristin E.

Volltext

Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides von Geiselman, Gina M, Zhuang, Xun, Kirby, James, Tran-Gyamfi, Mary B, Prahl, Jan-Philip, Sundstrom, Eric R, Gao, Yuqian, Munoz Munoz, Nathalie, Nicora, Carrie D, Clay, Derek M, Papa, Gabriella, Burnum-Johnson, Kristin E, Magnuson, Jon K, Tanjore, Deepti, Skerker, Jeffrey M, Gladden, John M

Volltext

Bayesian Inference for Integrating Yarrowia lipolytica Multiomics Datasets with Metabolic Modeling von McNaughton, Andrew D, Bredeweg, Erin L, Manzer, James, Zucker, Jeremy, Munoz Munoz, Nathalie, Burnet, Meagan C, Nakayasu, Ernesto S, Pomraning, Kyle R, Merkley, Eric D, Dai, Ziyu, Chrisler, William B, Baker, Scott E, St. John, Peter C, Kumar, Neeraj

Volltext

PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements von Bilbao, Aivett, Munoz, Nathalie, Kim, Joonhoon, Orton, Daniel J., Gao, Yuqian, Poorey, Kunal, Pomraning, Kyle R., Weitz, Karl, Burnet, Meagan, Nicora, Carrie D., Wilton, Rosemarie, Deng, Shuang, Dai, Ziyu, Oksen, Ethan, Gee, Aaron, Fasani, Rick A., Tsalenko, Anya, Tanjore, Deepti, Gardner, James, Smith, Richard D., Michener, Joshua K., Gladden, John M., Baker, Erin S., Petzold, Christopher J., Kim, Young-Mo, Apffel, Alex, Magnuson, Jon K., Burnum-Johnson, Kristin E.

Volltext

Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production von Czajka, Jeffrey J., Banerjee, Deepanwita, Eng, Thomas, Menasalvas, Javier, Yan, Chunsheng, Munoz, Nathalie Munoz, Poirier, Brenton C., Kim, Young-Mo, Baker, Scott E., Tang, Yinjie J., Mukhopadhyay, Aindrila

Volltext

Corn stover variability drives differences in bisabolene production by engineered Rhodotorula toruloides von Okonkwo, Onyinye, Dou, Chang, Oksen, Ethan, Narani, Akash, Marcondes, Wilian, Chen, Xiaowen, Kim, Joonhoon, Gao, Yuqian, Burnet, Meagan C, Webb-Robertson, Bobbie-Jo M, Poirier, Brenton C, Tanjore, Deepti, Magnuson, Jon K, Munoz, Nathalie Munoz, Gardner, James

Volltext

Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species von Dai, Ziyu, Pomraning, Kyle R, Deng, Shuang, Kim, Joonhoon, Campbell, Kristen B, Robles, Ana L, Hofstad, Beth A, Munoz, Nathalie, Gao, Yuqian, Lemmon, Teresa, Swita, Marie S, Zucker, Jeremy D, Kim, Young-Mo, Burnum-Johnson, Kristin E, Magnuson, Jon K

Volltext

The human plasma lipidome response to exertional heat tolerance testing von Estevao, Igor L, Kazman, Josh B, Bramer, Lisa M, Nicora, Carrie, Ren, Ming Qiang, Sambuughin, Nyamkhishig, Munoz, Nathalie, Kim, Young-Mo, Bloodsworth, Kent, Richert, Maile, Teeguarden, Justin, Burnum-Johnson, Kristin, Deuster, Patricia A, Nakayasu, Ernesto S, Many, Gina

Volltext

Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design von Chaves, Julie E., Wilton, Rosemarie, Gao, Yuqian, Munoz, Nathalie Munoz, Burnet, Meagan C., Schmitz, Zachary, Rowan, John, Burdick, Leah H., Elmore, Joshua, Guss, Adam, Close, Dan, Magnuson, Jon K., Burnum-Johnson, Kristin E., Michener, Joshua K.

Volltext

Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides von Kim, Joonhoon, Coradetti, Samuel T, Kim, Young-Mo, Gao, Yuqian, Yaegashi, Junko, Zucker, Jeremy D, Munoz, Nathalie, Zink, Erika M, Burnum-Johnson, Kristin E, Baker, Scott E, Simmons, Blake A, Skerker, Jeffrey M, Gladden, John M, Magnuson, Jon K

Volltext

Activity-based protein profiling identifies alternating activation of enzymes involved in the bifidobacterium shunt pathway or mucin degradation in the gut microbiome response to s... von Killinger, Bryan J., Whidbey, Christopher, Sadler, Natalie C., DeLeon, Adrian J., Munoz, Nathalie, Kim, Young-Mo, Wright, Aaron T.

Volltext

A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets von Zamith-Miranda, Daniel, Heyman, Heino M, Burnet, Meagan C, Couvillion, Sneha P, Zheng, Xueyun, Munoz, Nathalie, Nelson, William C, Kyle, Jennifer E, Zink, Erika M, Weitz, Karl K, Bloodsworth, Kent J, Clair, Geremy, Zucker, Jeremy D, Teuton, Jeremy R, Payne, Samuel H, Kim, Young-Mo, Reyes Gil, Morayma, Baker, Erin S, Bredeweg, Erin L, Nosanchuk, Joshua D, Nakayasu, Ernesto S

Volltext

Elucidating regulatory processes of intense physical activity by multi-omics analysis von Nakayasu, Ernesto S., Gritsenko, Marina A., Kim, Young-Mo, Kyle, Jennifer E., Stratton, Kelly G., Nicora, Carrie D., Munoz, Nathalie, Navarro, Kathleen M., Claborne, Daniel, Gao, Yuqian, Weitz, Karl K., Paurus, Vanessa L., Bloodsworth, Kent J., Allen, Kelsey A., Bramer, Lisa M., Montes, Fernando, Clark, Kathleen A., Tietje, Grant, Teeguarden, Justin, Burnum-Johnson, Kristin E.

Volltext

Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus von Pomraning, Kyle R., Dai, Ziyu, Munoz, Nathalie, Kim, Young-Mo, Gao, Yuqian, Deng, Shuang, Lemmon, Teresa, Swita, Marie S., Zucker, Jeremy D., Kim, Joonhoon, Mondo, Stephen J., Panisko, Ellen, Burnet, Meagan C., Webb-Robertson, Bobbie-Jo M., Hofstad, Beth, Baker, Scott E., Burnum-Johnson, Kristin E., Magnuson, Jon K.

Volltext

Commitment to Aerobic Glycolysis Sustains Immunosuppression of Human Mesenchymal Stem Cells von Liu, Yijun, Yuan, Xuegang, Muñoz, Nathalie, Logan, Timothy M., Ma, Teng

Volltext

Metabolic Reconfiguration Supports Reacquisition of Primitive Phenotype in Human Mesenchymal Stem Cell Aggregates von Liu, Yijun, Muñoz, Nathalie, Tsai, Ang‐Chen, Logan, Timothy M., Ma, Teng

Volltext

Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus von Pomraning, Kyle R, Dai, Ziyu, Munoz, Nathalie, Kim, Young-Mo, Gao, Yuqian, Deng, Shuang, Kim, Joonhoon, Hofstad, Beth A, Swita, Marie S, Lemmon, Teresa, Collett, James R, Panisko, Ellen A, Webb-Robertson, Bobbie-Jo M, Zucker, Jeremy D, Nicora, Carrie D, De Paoli, Henrique, Baker, Scott E, Burnum-Johnson, Kristin E, Hillson, Nathan J, Magnuson, Jon K

Volltext

High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in Pseudomonas putida KT2440 von Gao, Yuqian, Fillmore, Thomas L, Munoz, Nathalie, Bentley, Gayle J, Johnson, Christopher W, Kim, Joonhoon, Meadows, Jamie A, Zucker, Jeremy D, Burnet, Meagan C, Lipton, Anna K, Bilbao, Aivett, Orton, Daniel J, Kim, Young-Mo, Moore, Ronald J, Robinson, Errol W, Baker, Scott E, Webb-Robertson, Bobbie-Jo M, Guss, Adam M, Gladden, John M, Beckham, Gregg T, Magnuson, Jon K, Burnum-Johnson, Kristin E

Volltext