HIV-1 selectively exploits cross-reactive CTL “help” to promote dysfunctional programming of pro-inflammatory dendritic cells von Mailliard, RB, Smith, KN, Fecek, RJ, Zaccard, CR, Watkins, SC, Rappocciolo, G, Mullins, JI, Rinaldo, CR

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Persistence of HIV in Gut-Associated Lymphoid Tissue despite Long-Term Antiretroviral Therapy von Chun, Tae-Wook, Nickle, David C., Justement, Jesse S., Meyers, Jennifer H., Roby, Gregg, Hallahan, Claire W., Kottilil, Shyam, Moir, Susan, Mican, JoAnn M., Mullins, James I., Ward, Douglas J., Joseph A., Kovacs, Mannon, Peter J., Fauci, Anthony S.

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Acyclovir and Transmission of HIV-1 from Persons Infected with HIV-1 and HSV-2 von Celum, C, Wald, A, Lingappa, J.R, Magaret, A.S, Wang, R.S, Mugo, N, Mujugira, A, Baeten, J.M, Mullins, J.I, Hughes, J.P, Bukusi, E.A, Cohen, C.R, Katabira, E, Ronald, A, Kiarie, J, Farquhar, C, Stewart, G.J, Makhema, J, Essex, M, Were, E, Fife, K.H, de Bruyn, G, Gray, G.E, McIntyre, J.A, Manongi, R, Kapiga, S, Coetzee, D, Allen, S, Inambao, M, Kayitenkore, K, Karita, E, Kanweka, W, Delany, S, Rees, H, Vwalika, B, Stevens, W, Campbell, M.S, Thomas, K.K, Coombs, R.W, Morrow, R, Whittington, W.L.H, McElrath, M.J, Barnes, L, Ridzon, R, Corey, L

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DNA vaccines expressing conserved elements provide potent and broad immune responses von Pavlakis, GN, Kulkarni, V, Valentin, A, Rosati, M, Sardesai, NY, Mothe, B, Brander, C, LeGall, S, Weiner, DB, Rolland, M, Mullins, JI, Felber, BK

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DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites von Deng, Wenjie, Maust, Brandon S, Nickle, David C, Learn, Gerald H, Liu, Yi, Heath, Laura, Kosakovsky Pond, Sergei L, Mullins, James I

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Fitness Cost of Escape Mutations in p24 Gag in Association with Control of Human Immunodeficiency Virus Type 1 von MARTINEZ-PICADO, Javier, PRADO, Julia G, PILLAY, Tilly, ROUSSEAU, Christine, MUFFINS, James I, BRANDER, Christian, WALKER, Bruce D, STUART, David I, KIEPIELA, Photini, GOULDER, Philip, FRY, Elizabeth E, PFAFFEROTT, Katja, LESLIE, Alasdair, CHETTY, Senica, THOBAKGALE, Christina, HONEYBORNE, Isobel, CRAWFORD, Hayley, MATTHEWS, Philippa

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P07-06. HIV-1 transmission and early evolution: whole genome analysis von Herbeck, JT, Rolland, MT, Deng, WC, Collier, AC, Mullins, JI

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Decay of the HIV Reservoir in Patients Receiving Antiretroviral Therapy for Extended Periods: Implications for Eradication of Virus von Chun, Tae-Wook, Justement, J. Shawn, Moir, Susan, Hallahan, Claire W., Maenza, Janine, Mullins, James I., Collier, Ann C., Corey, Lawrence, Fauci, Anthony S.

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T-cell based sieve analysis ties HLA A02 to vaccine efficacy and IgA-C1 immune correlate in RV144 Thai trial von Hertz, T, Gartland, A, Janes, H, Li, S, Fong, Y, Tomaras, GD, Morris, D, Geraghty, D, Kijak, GH, Edlefsen, PT, Rolland, M, Larsen, BB, Tovanabutra, S, Sanders-Buell, E, DeCamp, AC, Magaret, CA, Ahmed, H, Nariya, S, Wong, K, Zhao, H, Deng, W, Maust, BS, Bose, M, Howell, S, Lazzaro, M, Bates, A, Lei, E, Bradfield, A, Ibitamuno, G, Assawadarachai, V, O'Connel, RJ, deSouza, MS, Nitayaphan, S, Rerks-Ngarm, S, Robb, ML, McElrath, MJ, Haynes, BF, Michael, NL, Gilbert, PB, Mullins, JI, Kim, JH

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Prevention efficacy of the broadly neutralizing antibody VRC01 depends on HIV-1 envelope sequence features von Juraska, Michal, Bai, Hongjun, deCamp, Allan C, Magaret, Craig A, Li, Li, Gillespie, Kevin, Carpp, Lindsay N, Giorgi, Elena E, Ludwig, James, Molitor, Cindy, Hudson, Aaron, Williamson, Brian D, Espy, Nicole, Simpkins, Brian, Rudnicki, Erika, Shao, Danica, Rossenkhan, Raabya, Edlefsen, Paul T, Westfall, Dylan H, Deng, Wenjie, Chen, Lennie, Zhao, Hong, Bhattacharya, Tanmoy, Pankow, Alec, Murrell, Ben, Yssel, Anna, Matten, David, York, Talita, Beaume, Nicolas, Gwashu-Nyangiwe, Asanda, Ndabambi, Nonkululeko, Thebus, Ruwayhida, Karuna, Shelly T, Morris, Lynn, Montefiori, David C, Hural, John A, Cohen, Myron S, Corey, Lawrence, Rolland, Morgane, Gilbert, Peter B, Williamson, Carolyn, Mullins, James I

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Optimized SMRT-UMI protocol produces highly accurate sequence datasets from diverse populations—Application to HIV-1 quasispecies von Westfall, Dylan H, Deng, Wenjie, Pankow, Alec, Murrell, Hugh, Chen, Lennie, Zhao, Hong, Williamson, Carolyn, Rolland, Morgane, Murrell, Ben, Mullins, James I

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Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission von HERBECK, Joshua T, MÜLLER, Viktor, GOTTLIEB, Geoffrey S, MAUST, Brandon S, LEDERGERBER, Bruno, TORTI, Carlo, DI GIAMBENEDETTO, Simona, GRAS, Luuk, GÜNTHARD, Huldrych F, JACOBSON, Lisa P, MULLINS, James I

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P17-14. Fitness-informed HIV-1 Gag-p24 vaccine design von Rolland, MM, Swain, VJ, Lanxon-Cookson, E, Rao, U, Henry, KR, Arts, EJ, Nickle, DC, Mullins, JI

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P09-18. Cw0303/0304 HIV specific CTL response toward GagYL9 select for HIV escape variants with low fitness that is compensated by intra-codon variation von Honeyborne, I, Leslie, A, Crawford, H, Rousseau, C M, Mullins, JI, Walker, B D, Goulder, P, Prado, J G

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Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial von Campbell, Mary S, Mullins, James I, Hughes, James P, Celum, Connie, Wong, Kim G, Raugi, Dana N, Sorensen, Stefanie, Stoddard, Julia N, Zhao, Hong, Deng, Wenjie, Kahle, Erin, Panteleeff, Dana, Baeten, Jared M, McCutchan, Francine E, Albert, Jan, Leitner, Thomas, Wald, Anna, Corey, Lawrence, Lingappa, Jairam R

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Improved Coreceptor Usage Prediction and Genotypic Monitoring of R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency Virus Type 1 env V3 Loop Sequences von Jensen, Mark A, Li, Fu-Sheng, van 't Wout, Angélique B, Nickle, David C, Shriner, Daniel, He, Hong-Xia, McLaughlin, Sherry, Shankarappa, Raj, Margolick, Joseph B, Mullins, James I

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HIV-infected individuals receiving effective antiviral therapy for extended periods of time continually replenish their viral reservoir von Chun, Tae-Wook, Nickle, David C, Justement, J Shawn, Large, Danielle, Semerjian, Alice, Curlin, Marcel E, O'Shea, M Angeline, Hallahan, Claire W, Daucher, Marybeth, Ward, Douglas J, Moir, Susan, Mullins, James I, Kovacs, Colin, Fauci, Anthony S

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OA01-06 LB. HIV-1 plasma RNA and risk of HIV-1 transmission von Lingappa, JR, Hughes, JP, Donnel, D, Baeten, JM, Mullins, JI, Campbell, MS, Gray, GE, Essex, M, Farquhar, C, Rees, H, Wald, A, Corey, L, Celum, C

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OA06-06 LB. Evidence of vaccine-induced changes in breakthrough HIV-1 strains from the Step trial von Rolland, M, Tovanabutra, S, Gilbert, PB, Sanders-Buell, E, Heath, L, deCamp, AC, Magaret, CC, Bose, M, Bradfield, A, O'Sullivan, A, Crossler, J, Deng, W, Zhao, H, Wong, K, Raugi, DN, Hural, J, Dubey, S, Frahm, N, Michael, NL, Shiver, J, Corey, L, Li, F, Self, SG, Kim, J, Buchbinder, S, Casimiro, DR, Robertson, MN, McElrath, MJ, McCutchan, FE, Mullins, JI

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A study of vaccine-induced immune pressure on breakthrough infections in the Phambili phase 2b HIV-1 vaccine efficacy trial von Hertz, T, Logan, M.G, Rolland, M, Magaret, C.A, Rademeyer, C, Fiore-Gartland, A, Edlefsen, P.T, DeCamp, A, Ahmed, H, Ngandu, N, Larsen, B.B, Frahm, N, Marais, J, Thebus, R, Geraghty, D, Hural, J, Corey, L, Kublin, J, Gray, G, McElrath, M.J, Mullins, J.I, Gilbert, P.B, Williamson, C

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