Genome-Wide Maps of m6A circRNAs Identify Widespread and Cell-Type-Specific Methylation Patterns that Are Distinct from mRNAs von Zhou, Chan, Molinie, Benoit, Daneshvar, Kaveh, Pondick, Joshua V., Wang, Jinkai, Van Wittenberghe, Nicholas, Xing, Yi, Giallourakis, Cosmas C., Mullen, Alan C.

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Master Transcription Factors Determine Cell-Type-Specific Responses to TGF-β Signaling von Mullen, Alan C., Orlando, David A., Newman, Jamie J., Lovén, Jakob, Kumar, Roshan M., Bilodeau, Steve, Reddy, Jessica, Guenther, Matthew G., DeKoter, Rodney P., Young, Richard A.

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Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells von Sigova, Alla A., Mullen, Alan C., Molinie, Benoit, Gupta, Sumeet, Orlando, David A., Guenther, Matthew G., Almada, Albert E., Lin, Charles, Sharp, Phillip A., Giallourakis, Cosmas C., Young, Richard A.

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lncRNA DIGIT and BRD3 protein form phase-separated condensates to regulate endoderm differentiation von Daneshvar, Kaveh, Ardehali, M. Behfar, Klein, Isaac A., Hsieh, Fu-Kai, Kratkiewicz, Arcadia J., Mahpour, Amin, Cancelliere, Sabrina O. L., Zhou, Chan, Cook, Brett M., Li, Wenyang, Pondick, Joshua V., Gupta, Sweta K., Moran, Sean P., Young, Richard A., Kingston, Robert E., Mullen, Alan C.

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TGFβ signalling acts as a molecular brake of myoblast fusion von Melendez, Julie, Sieiro, Daniel, Salgado, David, Morin, Valérie, Dejardin, Marie-Julie, Zhou, Chan, Mullen, Alan C., Marcelle, Christophe

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Hippo Tips the TGF-β Scale in Favor of Pluripotency von Mullen, Alan C.

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DIGIT Is a Conserved Long Noncoding RNA that Regulates GSC Expression to Control Definitive Endoderm Differentiation of Embryonic Stem Cells von Daneshvar, Kaveh, Pondick, Joshua V., Kim, Byeong-Moo, Zhou, Chan, York, Samuel R., Macklin, Jillian A., Abualteen, Ameed, Tan, Bo, Sigova, Alla A., Marcho, Chelsea, Tremblay, Kimberly D., Mager, Jesse, Choi, Michael Y., Mullen, Alan C.

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TGF-β Family Signaling in Embryonic and Somatic Stem-Cell Renewal and Differentiation von Mullen, Alan C, Wrana, Jeffrey L

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Our emerging understanding of the roles of long non-coding RNAs in normal liver function, disease, and malignancy von Mahpour, Amin, Mullen, Alan C.

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Nanchangmycin regulates FYN, PTK2, and MAPK1/3 to control the fibrotic activity of human hepatic stellate cells von Li, Wenyang, Chen, Jennifer Y, Sun, Cheng, Sparks, Robert P, Pantano, Lorena, Rahman, Raza-Ur, Moran, Sean P, Pondick, Joshua V, Kirchner, Rory, Wrobel, David, Bieler, Michael, Sauer, Achim, Ho Sui, Shannan J, Doerner, Julia F, Rippmann, Jörg F, Mullen, Alan C

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m(6)A-LAIC-seq reveals the census and complexity of the m(6)A epitranscriptome von Molinie, Benoit, Wang, Jinkai, Lim, Kok Seong, Hillebrand, Roman, Lu, Zhi-Xiang, Van Wittenberghe, Nicholas, Howard, Benjamin D, Daneshvar, Kaveh, Mullen, Alan C, Dedon, Peter, Xing, Yi, Giallourakis, Cosmas C

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m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells von Batista, Pedro J, Molinie, Benoit, Wang, Jinkai, Qu, Kun, Zhang, Jiajing, Li, Lingjie, Bouley, Donna M, Lujan, Ernesto, Haddad, Bahareh, Daneshvar, Kaveh, Carter, Ava C, Flynn, Ryan A, Zhou, Chan, Lim, Kok-Seong, Dedon, Peter, Wernig, Marius, Mullen, Alan C, Xing, Yi, Giallourakis, Cosmas C, Chang, Howard Y

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Identification and mapping of post-transcriptional modifications on the HIV-1 antisense transcript Ast in human cells von Estevez, Mariana, Li, Rui, Paul, Biplab, Daneshvar, Kaveh, Mullen, Alan C, Romerio, Fabio, Addepalli, Balasubrahmanyam

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Barriers to Use of Palliative Care and Advance Care Planning Discussions for Patients With End-Stage Liver Disease von Ufere, Nneka N., Donlan, John, Waldman, Lauren, Dienstag, Jules L., Friedman, Lawrence S., Corey, Kathleen E., Hashemi, Nikroo, Carolan, Peter, Mullen, Alan C., Thiim, Michael, Bhan, Irun, Nipp, Ryan, Greer, Joseph A., Temel, Jennifer S., Chung, Raymond T., El-Jawahri, Areej

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Single‐cell transcriptomics stratifies organoid models of metabolic dysfunction‐associated steatotic liver disease von Hess, Anja, Gentile, Stefan D, Ben Saad, Amel, Rahman, Raza‐Ur, Habboub, Tim, Pratt, Daniel S, Mullen, Alan C

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Gene Silencing Quantitatively Controls the Function of a Developmental trans-Activator von Hutchins, Anne S, Mullen, Alan C, Lee, Hubert W, Sykes, Kara J, High, Frances A, Hendrich, Brian D, Bird, Adrian P, Reiner, Steven L

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Physicians’ Perspectives on Palliative Care for Patients With End‐Stage Liver Disease: A National Survey Study von Ufere, Nneka N., Donlan, John, Waldman, Lauren, Patel, Arpan, Dienstag, Jules L., Friedman, Lawrence S., Corey, Kathleen E., Hashemi, Nikroo, Carolan, Peter, Mullen, Alan C., Thiim, Michael, Bhan, Irun, Nipp, Ryan, Greer, Joseph, Temel, Jennifer, Chung, Raymond T., El‐Jawahri, Areej

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Structural Analysis of CTLA-4 Function In Vivo von Masteller, Emma L, Chuang, Ellen, Mullen, Alan C, Reiner, Steve L, Thompson, Craig B

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ChREBP is activated by reductive stress and mediates GCKR-associated metabolic traits von Singh, Charandeep, Jin, Byungchang, Shrestha, Nirajan, Markhard, Andrew L., Panda, Apekshya, Calvo, Sarah E., Deik, Amy, Pan, Xingxiu, Zuckerman, Austin L., Ben Saad, Amel, Corey, Kathleen E., Sjoquist, Julia, Osganian, Stephanie, AminiTabrizi, Roya, Rhee, Eugene P., Shah, Hardik, Goldberger, Olga, Mullen, Alan C., Cracan, Valentin, Clish, Clary B., Mootha, Vamsi K., Goodman, Russell P.

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m6A RNA Modification Controls Cell Fate Transition in Mammalian Embryonic Stem Cells von Batista, Pedro J., Molinie, Benoit, Wang, Jinkai, Qu, Kun, Zhang, Jiajing, Li, Lingjie, Bouley, Donna M., Lujan, Ernesto, Haddad, Bahareh, Daneshvar, Kaveh, Carter, Ava C., Flynn, Ryan A., Zhou, Chan, Lim, Kok-Seong, Dedon, Peter, Wernig, Marius, Mullen, Alan C., Xing, Yi, Giallourakis, Cosmas C., Chang, Howard Y.

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