Disruption of KMT2D perturbs germinal center B cell development and promotes lymphomagenesis von Zhang, Jiyuan, Dominguez-Sola, David, Hussein, Shafinaz, Lee, Ji-Eun, Holmes, Antony B, Bansal, Mukesh, Vlasevska, Sofija, Mo, Tongwei, Tang, Hongyan, Basso, Katia, Ge, Kai, Dalla-Favera, Riccardo, Pasqualucci, Laura

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Elucidating Compound Mechanism of Action by Network Perturbation Analysis von Woo, Jung Hoon, Shimoni, Yishai, Yang, Wan Seok, Subramaniam, Prem, Iyer, Archana, Nicoletti, Paola, Rodríguez Martínez, María, López, Gonzalo, Mattioli, Michela, Realubit, Ronald, Karan, Charles, Stockwell, Brent R., Bansal, Mukesh, Califano, Andrea

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An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma von Sumazin, Pavel, Yang, Xuerui, Chiu, Hua-Sheng, Chung, Wei-Jen, Iyer, Archana, Llobet-Navas, David, Rajbhandari, Presha, Bansal, Mukesh, Guarnieri, Paolo, Silva, Jose, Califano, Andrea

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Novel Hybrid Phenotype Revealed in Small Cell Lung Cancer by a Transcription Factor Network Model That Can Explain Tumor Heterogeneity von Udyavar, Akshata R, Wooten, David J, Hoeksema, Megan, Bansal, Mukesh, Califano, Andrea, Estrada, Lourdes, Schnell, Santiago, Irish, Jonathan M, Massion, Pierre P, Quaranta, Vito

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MEF2B mutations lead to deregulated expression of the oncogene BCL6 in diffuse large B cell lymphoma von Ying, Carol Y, Dominguez-Sola, David, Fabi, Melissa, Lorenz, Ivo C, Hussein, Shafinaz, Bansal, Mukesh, Califano, Andrea, Pasqualucci, Laura, Basso, Katia, Dalla-Favera, Riccardo

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Aberrant epithelial GREM1 expression initiates colonic tumorigenesis from cells outside the stem cell niche von Davis, Hayley, Irshad, Shazia, Bansal, Mukesh, Rafferty, Hannah, Boitsova, Tatjana, Bardella, Chiara, Jaeger, Emma, Lewis, Annabelle, Freeman-Mills, Luke, Giner, Francesc C, Rodenas-Cuadrado, Pedro, Mallappa, Sreelakshmi, Clark, Susan, Thomas, Huw, Jeffery, Rosemary, Poulsom, Richard, Rodriguez-Justo, Manuel, Novelli, Marco, Chetty, Runjan, Silver, Andrew, Sansom, Owen J, Greten, Florian R, Wang, Lai Mun, East, James E, Tomlinson, Ian, Leedham, Simon J

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Inference of gene regulatory networks and compound mode of action from time course gene expression profiles von Bansal, Mukesh, Gatta, Giusy Della, di Bernardo, Diego

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A Yeast Synthetic Network for In Vivo Assessment of Reverse-Engineering and Modeling Approaches von Cantone, Irene, Marucci, Lucia, Iorio, Francesco, Ricci, Maria Aurelia, Belcastro, Vincenzo, Bansal, Mukesh, Santini, Stefania, di Bernardo, Mario, di Bernardo, Diego, Cosma, Maria Pia

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Quantitative Tyrosine Phosphoproteomics of Epidermal Growth Factor Receptor (EGFR) Tyrosine Kinase Inhibitor-treated Lung Adenocarcinoma Cells Reveals Potential Novel Biomarkers of... von Zhang, Xu, Maity, Tapan, Kashyap, Manoj K., Bansal, Mukesh, Venugopalan, Abhilash, Singh, Sahib, Awasthi, Shivangi, Marimuthu, Arivusudar, Charles Jacob, Harrys Kishore, Belkina, Natalya, Pitts, Stephanie, Cultraro, Constance M., Gao, Shaojian, Kirkali, Guldal, Biswas, Romi, Chaerkady, Raghothama, Califano, Andrea, Pandey, Akhilesh, Guha, Udayan

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Enrichment analysis of phenotypic data for drug repurposing in rare diseases von Ambesi-Impiombato, Alberto, Cox, Kimberly, Ramboz, Sylvie, Brunner, Daniela, Bansal, Mukesh, Leahy, Emer

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High-throughput validation of ceRNA regulatory networks von Chiu, Hua-Sheng, Martínez, María Rodríguez, Bansal, Mukesh, Subramanian, Aravind, Golub, Todd R, Yang, Xuerui, Sumazin, Pavel, Califano, Andrea

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Alx4 relays sequential FGF signaling to induce lacrimal gland morphogenesis von Garg, Ankur, Bansal, Mukesh, Gotoh, Noriko, Feng, Gen-Sheng, Zhong, Jian, Wang, Fen, Kariminejad, Ariana, Brooks, Steven, Zhang, Xin

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Adult stem cell activity in naked mole rats for long-term tissue maintenance von Montazid, Shamir, Bandyopadhyay, Sheila, Hart, Daniel W., Gao, Nan, Johnson, Brian, Thrumurthy, Sri G., Penn, Dustin J., Wernisch, Bettina, Bansal, Mukesh, Altrock, Philipp M., Rost, Fabian, Gazinska, Patrycja, Ziolkowski, Piotr, Hayee, Bu’Hussain, Liu, Yue, Han, Jiangmeng, Tessitore, Annamaria, Koth, Jana, Bodmer, Walter F., East, James E., Bennett, Nigel C., Tomlinson, Ian, Irshad, Shazia

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Ribosomal protein S11 influences glioma response to TOP2 poisons von Awah, Chidiebere U., Chen, Li, Bansal, Mukesh, Mahajan, Aayushi, Winter, Jan, Lad, Meeki, Warnke, Louisa, Gonzalez-Buendia, Edgar, Park, Cheol, Zhang, Daniel, Feldstein, Eric, Yu, Dou, Zannikou, Markella, Balyasnikova, Irina V., Martuscello, Regina, Konerman, Silvana, Győrffy, Balázs, Burdett, Kirsten B., Scholtens, Denise M., Stupp, Roger, Ahmed, Atique, Hsu, Patrick, Sonabend, Adam M.

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FGF-induced Pea3 transcription factors program the genetic landscape for cell fate determination von Garg, Ankur, Hannan, Abdul, Wang, Qian, Collins, Tamica, Teng, Siying, Bansal, Mukesh, Zhong, Jian, Xu, Keli, Zhang, Xin

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Elucidating synergistic dependencies in lung adenocarcinoma by proteome-wide signaling-network analysis von Bansal, Mukesh, He, Jing, Peyton, Michael, Kustagi, Manjunath, Iyer, Archana, Comb, Michael, White, Michael, Minna, John D, Califano, Andrea

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Inferring protein modulation from gene expression data using conditional mutual information von Giorgi, Federico M, Lopez, Gonzalo, Woo, Jung H, Bisikirska, Brygida, Califano, Andrea, Bansal, Mukesh

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ABC transporters and the proteasome complex are implicated in susceptibility to Stevens-Johnson syndrome and toxic epidermal necrolysis across multiple drugs von Nicoletti, Paola, Bansal, Mukesh, Lefebvre, Celine, Guarnieri, Paolo, Shen, Yufeng, Pe'er, Itsik, Califano, Andrea, Floratos, Aris

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Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering von Della Gatta, Giusy, Bansal, Mukesh, Ambesi-Impiombato, Alberto, Antonini, Dario, Missero, Caterina, di Bernardo, Diego

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Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information von Giorgi, Federico M, Lopez, Gonzalo, Woo, Jung H, Bisikirska, Brygida, Califano, Andrea, Bansal, Mukesh

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