Saliva or Nasopharyngeal Swab Specimens for Detection of SARS-CoV-2 von Wyllie, Anne L, Fournier, John, Casanovas-Massana, Arnau, Campbell, Melissa, Tokuyama, Maria, Vijayakumar, Pavithra, Warren, Joshua L, Geng, Bertie, Muenker, M. Catherine, Moore, Adam J, Vogels, Chantal B.F, Petrone, Mary E, Ott, Isabel M, Lu, Peiwen, Venkataraman, Arvind, Lu-Culligan, Alice, Klein, Jonathan, Earnest, Rebecca, Simonov, Michael, Datta, Rupak, Handoko, Ryan, Naushad, Nida, Sewanan, Lorenzo R, Valdez, Jordan, White, Elizabeth B, Lapidus, Sarah, Kalinich, Chaney C, Jiang, Xiaodong, Kim, Daniel J, Kudo, Eriko, Linehan, Melissa, Mao, Tianyang, Moriyama, Miyu, Oh, Ji E, Park, Annsea, Silva, Julio, Song, Eric, Takahashi, Takehiro, Taura, Manabu, Weizman, Orr-El, Wong, Patrick, Yang, Yexin, Bermejo, Santos, Odio, Camila D, Omer, Saad B, Dela Cruz, Charles S, Farhadian, Shelli, Martinello, Richard A, Iwasaki, Akiko, Grubaugh, Nathan D, Ko, Albert I

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Delayed production of neutralizing antibodies correlates with fatal COVID-19 von Lucas, Carolina, Klein, Jon, Sundaram, Maria E., Liu, Feimei, Wong, Patrick, Silva, Julio, Mao, Tianyang, Oh, Ji Eun, Mohanty, Subhasis, Huang, Jiefang, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Israelow, Benjamin, Vogels, Chantal B. F., Muenker, M. Catherine, Chang, C-Hong, Casanovas-Massana, Arnau, Moore, Adam J., Zell, Joseph, Fournier, John B., Wyllie, Anne L., Campbell, Melissa, Lee, Alfred I., Chun, Hyung J., Grubaugh, Nathan D., Schulz, Wade L., Farhadian, Shelli, Dela Cruz, Charles, Ring, Aaron M., Shaw, Albert C., Wisnewski, Adam V., Yildirim, Inci, Ko, Albert I., Omer, Saad B., Iwasaki, Akiko

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De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report von Gandhi, Shiv, Klein, Jonathan, Robertson, Alexander J., Peña-Hernández, Mario A., Lin, Michelle J., Roychoudhury, Pavitra, Lu, Peiwen, Fournier, John, Ferguson, David, Mohamed Bakhash, Shah A. K., Catherine Muenker, M., Srivathsan, Ariktha, Wunder, Elsio A., Kerantzas, Nicholas, Wang, Wenshuai, Lindenbach, Brett, Pyle, Anna, Wilen, Craig B., Ogbuagu, Onyema, Greninger, Alexander L., Iwasaki, Akiko, Schulz, Wade L., Ko, Albert I.

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Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity von Lucas, Carolina, Vogels, Chantal B. F., Yildirim, Inci, Rothman, Jessica E., Lu, Peiwen, Monteiro, Valter, Gehlhausen, Jeff R., Campbell, Melissa, Silva, Julio, Tabachnikova, Alexandra, Peña-Hernandez, Mario A., Muenker, M. Catherine, Breban, Mallery I., Fauver, Joseph R., Mohanty, Subhasis, Huang, Jiefang, Shaw, Albert C., Ko, Albert I., Omer, Saad B., Grubaugh, Nathan D., Iwasaki, Akiko

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Longitudinal analyses reveal immunological misfiring in severe COVID-19 von Lucas, Carolina, Wong, Patrick, Klein, Jon, Castro, Tiago B. R., Silva, Julio, Sundaram, Maria, Ellingson, Mallory K., Mao, Tianyang, Oh, Ji Eun, Israelow, Benjamin, Takahashi, Takehiro, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Mohanty, Subhasis, Wang, Haowei, Wyllie, Anne L., Vogels, Chantal B. F., Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M., Moore, Adam J., Muenker, M. Catherine, Fournier, John B., Campbell, Melissa, Odio, Camila D., Casanovas-Massana, Arnau, Herbst, Roy, Shaw, Albert C., Medzhitov, Ruslan, Schulz, Wade L., Grubaugh, Nathan D., Dela Cruz, Charles, Farhadian, Shelli, Ko, Albert I., Omer, Saad B., Iwasaki, Akiko

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Sex differences in immune responses that underlie COVID-19 disease outcomes von Takahashi, Takehiro, Ellingson, Mallory K., Wong, Patrick, Israelow, Benjamin, Lucas, Carolina, Klein, Jon, Silva, Julio, Mao, Tianyang, Oh, Ji Eun, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Liu, Feimei, Meir, Amit, Sun, Jonathan, Wang, Eric Y., Casanovas-Massana, Arnau, Wyllie, Anne L., Vogels, Chantal B. F., Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M., Moore, Adam J., Shaw, Albert, Fournier, John B., Odio, Camila D., Farhadian, Shelli, Dela Cruz, Charles, Grubaugh, Nathan D., Schulz, Wade L., Ring, Aaron M., Ko, Albert I., Omer, Saad B., Iwasaki, Akiko

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Detection of SARS-CoV-2 RNA by multiplex RT-qPCR von Kudo, Eriko, Israelow, Benjamin, Vogels, Chantal B F, Lu, Peiwen, Wyllie, Anne L, Tokuyama, Maria, Venkataraman, Arvind, Brackney, Doug E, Ott, Isabel M, Petrone, Mary E, Earnest, Rebecca, Lapidus, Sarah, Muenker, M Catherine, Moore, Adam J, Casanovas-Massana, Arnau, Omer, Saad B, Dela Cruz, Charles S, Farhadian, Shelli F, Ko, Albert I, Grubaugh, Nathan D, Iwasaki, Akiko

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Structural factors associated with SARS-CoV-2 infection risk in an urban slum setting in Salvador, Brazil: A cross-sectional survey von Fofana, Mariam O, Nery, Jr, Nivison, Aguilar Ticona, Juan P, de Andrade Belitardo, Emilia M M, Victoriano, Renato, Anjos, Rôsangela O, Portilho, Moyra M, de Santana, Mayara C, Dos Santos, Laiara L, de Oliveira, Daiana, Cruz, Jaqueline S, Muenker, M Catherine, Khouri, Ricardo, Wunder, Jr, Elsio A, Hitchings, Matt D T, Johnson, Olatunji, Reis, Mitermayer G, Ribeiro, Guilherme S, Cummings, Derek A T, Costa, Federico, Ko, Albert I

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Kynurenic acid may underlie sex-specific immune responses to COVID-19 von Cai, Yuping, Kim, Daniel J, Takahashi, Takehiro, Broadhurst, David I, Yan, Hong, Ma, Shuangge, Rattray, Nicholas J W, Casanovas-Massana, Arnau, Israelow, Benjamin, Klein, Jon, Lucas, Carolina, Mao, Tianyang, Moore, Adam J, Muenker, M Catherine, Oh, Ji Eun, Silva, Julio, Wong, Patrick, Ko, Albert I, Khan, Sajid A, Iwasaki, Akiko, Johnson, Caroline H

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No evidence of fetal defects or anti-syncytin-1 antibody induction following COVID-19 mRNA vaccination von Lu-Culligan, Alice, Tabachnikova, Alexandra, Pérez-Then, Eddy, Tokuyama, Maria, Lee, Hannah J, Lucas, Carolina, Silva Monteiro, Valter, Miric, Marija, Brache, Vivian, Cochon, Leila, Muenker, M Catherine, Mohanty, Subhasis, Huang, Jiefang, Kang, Insoo, Dela Cruz, Charles, Farhadian, Shelli, Campbell, Melissa, Yildirim, Inci, Shaw, Albert C, Ma, Shuangge, Vermund, Sten H, Ko, Albert I, Omer, Saad B, Iwasaki, Akiko

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Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva von Ott, Isabel M, Strine, Madison S, Watkins, Anne E, Boot, Maikel, Kalinich, Chaney C, Harden, Christina A, Vogels, Chantal B F, Casanovas-Massana, Arnau, Moore, Adam J, Muenker, M Catherine, Nakahata, Maura, Tokuyama, Maria, Nelson, Allison, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Dela Cruz, Charles S, Farhadian, Shelli F, Ko, Albert I, Iwasaki, Akiko, Grubaugh, Nathan D, Wilen, Craig B, Wyllie, Anne L

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Use of Whole-Genome Sequencing to Estimate the Contribution of Immune Evasion and Waning Immunity on Decreasing COVID-19 Vaccine Effectiveness von Lind, Margaret L, Copin, Richard, McCarthy, Shane, Coppi, Andreas, Warner, Fred, Ferguson, David, Duckwall, Chelsea, Borg, Ryan, Muenker, M Catherine, Overton, John, Hamon, Sara, Zhou, Anbo, Cummings, Derek A T, Ko, Albert I, Hamilton, Jennifer D, Schulz, Wade L, Hitchings, Matt D T

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Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT–qPCR primer–probe sets von Vogels, Chantal B. F., Brito, Anderson F., Wyllie, Anne L., Fauver, Joseph R., Ott, Isabel M., Kalinich, Chaney C., Petrone, Mary E., Casanovas-Massana, Arnau, Catherine Muenker, M., Moore, Adam J., Klein, Jonathan, Lu, Peiwen, Lu-Culligan, Alice, Jiang, Xiaodong, Kim, Daniel J., Kudo, Eriko, Mao, Tianyang, Moriyama, Miyu, Oh, Ji Eun, Park, Annsea, Silva, Julio, Song, Eric, Takahashi, Takehiro, Taura, Manabu, Tokuyama, Maria, Venkataraman, Arvind, Weizman, Orr-El, Wong, Patrick, Yang, Yexin, Cheemarla, Nagarjuna R., White, Elizabeth B., Lapidus, Sarah, Earnest, Rebecca, Geng, Bertie, Vijayakumar, Pavithra, Odio, Camila, Fournier, John, Bermejo, Santos, Farhadian, Shelli, Dela Cruz, Charles S., Iwasaki, Akiko, Ko, Albert I., Landry, Marie L., Foxman, Ellen F., Grubaugh, Nathan D.

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Maternal respiratory SARS-CoV-2 infection in pregnancy is associated with a robust inflammatory response at the maternal-fetal interface von Lu-Culligan, Alice, Chavan, Arun R., Vijayakumar, Pavithra, Irshaid, Lina, Courchaine, Edward M., Milano, Kristin M., Tang, Zhonghua, Pope, Scott D., Song, Eric, Vogels, Chantal B.F., Lu-Culligan, William J., Campbell, Katherine H., Casanovas-Massana, Arnau, Bermejo, Santos, Toothaker, Jessica M., Lee, Hannah J., Liu, Feimei, Schulz, Wade, Fournier, John, Muenker, M. Catherine, Moore, Adam J., Konnikova, Liza, Neugebauer, Karla M., Ring, Aaron, Grubaugh, Nathan D., Ko, Albert I., Morotti, Raffaella, Guller, Seth, Kliman, Harvey J., Iwasaki, Akiko, Farhadian, Shelli F.

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Author Correction: Delayed production of neutralizing antibodies correlates with fatal COVID-19 von Lucas, Carolina, Klein, Jon, Sundaram, Maria E., Liu, Feimei, Wong, Patrick, Silva, Julio, Mao, Tianyang, Oh, Ji Eun, Mohanty, Subhasis, Huang, Jiefang, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Israelow, Benjamin, Vogels, Chantal B. F., Muenker, M. Catherine, Chang, C-Hong, Casanovas-Massana, Arnau, Moore, Adam J., Zell, Joseph, Fournier, John B., Wyllie, Anne L., Campbell, Melissa, Lee, Alfred I., Chun, Hyung J., Grubaugh, Nathan D., Schulz, Wade L., Farhadian, Shelli, Dela Cruz, Charles, Ring, Aaron M., Shaw, Albert C., Wisnewski, Adam V., Yildirim, Inci, Ko, Albert I., Omer, Saad B., Iwasaki, Akiko

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Tracking smell loss to identify healthcare workers with SARS-CoV-2 infection von Weiss, Julian J, Attuquayefio, Tuki N, White, Elizabeth B, Li, Fangyong, Herz, Rachel S, White, Theresa L, Campbell, Melissa, Geng, Bertie, Datta, Rupak, Wyllie, Anne L, Grubaugh, Nathan D, Casanovas-Massana, Arnau, Muenker, M Catherine, Moore, Adam J, Handoko, Ryan, Iwasaki, Akiko, Martinello, Richard A, Ko, Albert I, Small, Dana M, Farhadian, Shelli F

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Risk of Sexually Transmitted Zika Virus in a Cohort of Economically Disadvantaged Urban Residents von Aguilar Ticona, Juan P, Baig, Huma, Nery, Nivison, Doss-Gollin, Simon, Sacramento, Gielson A, Adhikarla, Haritha, Muenker, M Catherine, Wunder, Elsio A, Nascimento, Eduardo J M, Marques, Ernesto T A, Reis, Mitermayer G, Ko, Albert I, Costa, Federico

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Accessing activity and viscoelastic properties of artificial and living systems from passive measurement von Muenker, Till M., Knotz, Gabriel, Krüger, Matthias, Betz, Timo

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Characterizing intracellular mechanics via optical tweezers-based microrheology von Vos, Bart E., Muenker, Till M., Betz, Timo

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Plasmodium infection is associated with cross-reactive antibodies to carbohydrate epitopes on the SARS-CoV-2 Spike protein von Lapidus, Sarah, Liu, Feimei, Casanovas-Massana, Arnau, Dai, Yile, Huck, John D., Lucas, Carolina, Klein, Jon, Filler, Renata B., Strine, Madison S., Sy, Mouhamad, Deme, Awa B., Badiane, Aida S., Dieye, Baba, Ndiaye, Ibrahima Mbaye, Diedhiou, Younous, Mbaye, Amadou Moctar, Diagne, Cheikh Tidiane, Vigan-Womas, Inés, Mbengue, Alassane, Sadio, Bacary D., Diagne, Moussa M., Moore, Adam J., Mangou, Khadidiatou, Diallo, Fatoumata, Sene, Seynabou D., Pouye, Mariama N., Faye, Rokhaya, Diouf, Babacar, Nery, Nivison, Costa, Federico, Reis, Mitermayer G., Muenker, M. Catherine, Hodson, Daniel Z., Mbarga, Yannick, Katz, Ben Z., Andrews, Jason R., Campbell, Melissa, Srivathsan, Ariktha, Kamath, Kathy, Baum-Jones, Elisabeth, Faye, Ousmane, Sall, Amadou Alpha, Vélez, Juan Carlos Quintero, Cappello, Michael, Wilson, Michael, Ben-Mamoun, Choukri, Tedder, Richard, McClure, Myra, Cherepanov, Peter, Somé, Fabrice A., Dabiré, Roch K., Moukoko, Carole Else Eboumbou, Ouédraogo, Jean Bosco, Boum, Yap, Shon, John, Ndiaye, Daouda, Wisnewski, Adam, Parikh, Sunil, Iwasaki, Akiko, Wilen, Craig B., Ko, Albert I., Ring, Aaron M., Bei, Amy K.

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