RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR von Law, Charity W., Alhamdoosh, Monther, Su, Shian, Smyth, Gordon K., Ritchie, Matthew E.

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Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data von You, Yue, Dong, Xueyi, Wee, Yong Kiat, Maxwell, Mhairi J, Alhamdoosh, Monther, Smyth, Gordon K, Hickey, Peter F, Ritchie, Matthew E, Law, Charity W

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Fast decorrelated neural network ensembles with random weights von Alhamdoosh, Monther, Wang, Dianhui

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Publisher Correction: Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data von You, Yue, Dong, Xueyi, Wee, Yong Kiat, Maxwell, Mhairi J, Alhamdoosh, Monther, Smyth, Gordon K, Hickey, Peter F, Ritchie, Matthew E, Law, Charity W

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RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR [version 1; peer review: 3 approved] von Law, Charity W, Alhamdoosh, Monther, Su, Shian, Smyth, Gordon K, Ritchie, Matthew E

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RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR [version 3; peer review: 3 approved] von Law, Charity W, Alhamdoosh, Monther, Su, Shian, Dong, Xueyi, Tian, Luyi, Smyth, Gordon K, Ritchie, Matthew E

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Easy and efficient ensemble gene set testing with EGSEA von Alhamdoosh, Monther, Law, Charity W, Tian, Luyi, Sheridan, Julie M, Ng, Milica, Ritchie, Matthew E

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A guide to creating design matrices for gene expression experiments [version 1; peer review: 2 approved] von Law, Charity W, Zeglinski, Kathleen, Dong, Xueyi, Alhamdoosh, Monther, Smyth, Gordon K, Ritchie, Matthew E

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Machine learning applied to whole‐blood RNA‐sequencing data uncovers distinct subsets of patients with systemic lupus erythematosus von Figgett, William A, Monaghan, Katherine, Ng, Milica, Alhamdoosh, Monther, Maraskovsky, Eugene, Wilson, Nicholas J, Hoi, Alberta Y, Morand, Eric F, Mackay, Fabienne

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Matrix metalloproteinase-7 is increased in lung bases but not apices in idiopathic pulmonary fibrosis von Jaffar, Jade, Wong, Mae, Fishbein, Gregory A., Alhamdoosh, Monther, McMillan, Laura, Gamell-Fulla, Cristina, Ng, Milica, Wilson, Nick, Symons, Karen, Glaspole, Ian, Westall, Glen

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Topical application of human-derived Ig isotypes for the control of acute respiratory infection evaluated in a human CD89-expressing mouse model von Koernig, Sandra, Campbell, Ian K., Mackenzie-Kludas, Charley, Schaub, Alexander, Loetscher, Marius, Ching Ng, Wy, Zehnder, Roland, Pelczar, Pawel, Sanli, Ildem, Alhamdoosh, Monther, Ng, Milica, Brown, Lorena E., Käsermann, Fabian, Vonarburg, Cédric, Zuercher, Adrian W.

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Whole blood transcriptomics reveals granulocyte colony‐stimulating factor as a mediator of cardiopulmonary bypass‐induced systemic inflammatory response syndrome von Martin, Katherine R, Gamell, Cristina, Tai, Tsin Yee, Bonelli, Roberto, Hansen, Jacinta, Tatoulis, James, Alhamdoosh, Monther, Wilson, Nicholas, Wicks, Ian

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Cellular Microenvironment Stiffness Regulates Eicosanoid Production and Signaling Pathways von Berhan, Asres, Harris, Trudi, Jaffar, Jade, Jativa, Fernando, Langenbach, Shenna, Lönnstedt, Ingrid, Alhamdoosh, Monther, Ng, Milica, Lee, Peter, Westall, Glen, Wilson, Nick, Wilson, Michael, Stewart, Alastair G.

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Evolutionary extreme learning machine ensembles with size control von Wang, Dianhui, Alhamdoosh, Monther

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Combining multiple tools outperforms individual methods in gene set enrichment analyses von Alhamdoosh, Monther, Ng, Milica, Wilson, Nicholas J, Sheridan, Julie M, Huynh, Huy, Wilson, Michael J, Ritchie, Matthew E

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Cellular Microenvironment Stiffness Regulates Eicosanoid Production and Signaling Pathways von Berhan, Asres, Harris, Trudi, Jaffar, Jade, Jativa, Fernando, Langenbach, Shenna, Lönnstedt, Ingrid, Alhamdoosh, Monther, Ng, Milica, Lee, Peter, Westall, Glen, Wilson, Nick, Wilson, Michael, Stewart, Alastair G

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Abstract 10491: CSL112 Suppresses Inflammation in Human Monocyte-Derived Macrophages von Didichenko, Svetlana A, Adam, Jacqueline, Navdaev, Alexey V, Wong, Mae, Alhamdoosh, Monther, Saxenhofer, Moritz, Velkoska, Elena, Wright, Samuel D, Kingwell, Bronwyn A

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CSL324, a granulocyte colony-stimulating factor receptor antagonist, blocks neutrophil migration markers that are upregulated in hidradenitis suppurativa von Gamell, Cristina, Bankovacki, Aleksandra, Scalzo-Inguanti, Karen, Sedgmen, Bradley, Alhamdoosh, Monther, Gail, Emma, Turkovic, Lydia, Millar, Christine, Johnson, Laura, Wahlsten, Michelle, Richter, Jim, Schuster, Jared, Dyson, Allison, Nicolopoulos, Jenny, Varigos, George, Ng, Milica, Wilson, Nick, Field, Judith, Kern, Johannes S, Lindqvist, Lisa M

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Blockade of the G-CSF Receptor Is Protective in a Mouse Model of Renal Ischemia-Reperfusion Injury von McRae, Jennifer L, Vikstrom, Ingela B, Bongoni, Anjan K, Salvaris, Evelyn J, Fisicaro, Nella, Ng, Milica, Alhamdoosh, Monther, Baz Morelli, Adriana, Cowan, Peter J, Pearse, Martin J

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Targeting the Human βc Receptor Inhibits Contact Dermatitis in a Transgenic Mouse Model von Yip, Kwok Ho, McKenzie, Duncan, Ramshaw, Hayley S., Chao, Jessica, McClure, Barbara J., Raquet, Elmar, Kraushaar, Timo, Röder, Joachim, Maxwell, Mhairi, Alhamdoosh, Monther, Hammet, Andrew, Fong, Jia Hong, Zeglinski, Kathleen, Monaghan, Katherine, Pant, Harshita, Grimbaldeston, Michele A., Vairo, Gino, Wilson, Nicholas J., Owczarek, Catherine M., Hercus, Timothy R., Lopez, Angel F., Tumes, Damon J.

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