Enteric Coronavirus Infection and Treatment Modeled With an Immunocompetent Human Intestine-On-A-Chip von Bein, Amir, Kim, Seongmin, Goyal, Girija, Cao, Wuji, Fadel, Cicely, Naziripour, Arash, Sharma, Sanjay, Swenor, Ben, LoGrande, Nina, Nurani, Atiq, Miao, Vincent N, Navia, Andrew W, Ziegler, Carly G K, Montañes, José Ordovas, Prabhala, Pranav, Kim, Min Sun, Prantil-Baun, Rachelle, Rodas, Melissa, Jiang, Amanda, O'Sullivan, Lucy, Tillya, Gladness, Shalek, Alex K, Ingber, Donald E

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Distribution and storage of inflammatory memory in barrier tissues von Ordovas-Montanes, Jose, Beyaz, Semir, Rakoff-Nahoum, Seth, Shalek, Alex K.

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Robust differentiation of human enteroendocrine cells from intestinal stem cells von Zeve, Daniel, Stas, Eric, de Sousa Casal, Joshua, Mannam, Prabhath, Qi, Wanshu, Yin, Xiaolei, Dubois, Sarah, Shah, Manasvi S., Syverson, Erin P., Hafner, Sophie, Karp, Jeffrey M., Carlone, Diana L., Ordovas-Montanes, Jose, Breault, David T.

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Desmosterol suppresses macrophage inflammasome activation and protects against vascular inflammation and atherosclerosis von Zhang, Xinbo, McDonald, Jeffrey G., Aryal, Binod, Canfrán-Duque, Alberto, Goldberg, Emily L., Araldi, Elisa, Ding, Wen, Fan, Yuhua, Thompson, Bonne M., Singh, Abhishek K., Li, Qian, Tellides, George, Ordovás-Montanes, Jose, Milian, Rolando García, Dixit, Vishwa Deep, Ikonen, Elina, Suárez, Yajaira, Fernández-Hernando, Carlos

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Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis von Smillie, Christopher S., Biton, Moshe, Ordovas-Montanes, Jose, Sullivan, Keri M., Burgin, Grace, Graham, Daniel B., Herbst, Rebecca H., Rogel, Noga, Slyper, Michal, Waldman, Julia, Sud, Malika, Andrews, Elizabeth, Velonias, Gabriella, Haber, Adam L., Jagadeesh, Karthik, Vickovic, Sanja, Yao, Junmei, Stevens, Christine, Dionne, Danielle, Nguyen, Lan T., Villani, Alexandra-Chloé, Hofree, Matan, Creasey, Elizabeth A., Huang, Hailiang, Rozenblatt-Rosen, Orit, Garber, John J., Khalili, Hamed, Desch, A. Nicole, Daly, Mark J., Ananthakrishnan, Ashwin N., Shalek, Alex K., Xavier, Ramnik J., Regev, Aviv

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Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19 von Bernardes, Joana P., Tran, Florian, Best, Lena, Bordoni, Dora, Josephs-Spaulding, Jonathan, Köhler, Philipp, Künstner, Axel, Rosati, Elisa, Bacher, Petra, Bruse, Niklas, Franzenburg, Sören, Frey, Norbert, Fuß, Janina, Glück, Andreas, Hamm, Jacob, Imm, Simon, Kaiser, Sina, Lange, Christoph, Laue, Georg, Marinos, Georgios, Pickkers, Peter, Rabe, Klaus F., Renz, Alina, Röcken, Christoph, Rupp, Jan, Schaffarzyk, Annika, Scheffold, Alexander, Schulte-Schrepping, Jonas, Skowasch, Dirk, Ulas, Thomas, Wandinger, Klaus-Peter, Wittig, Michael, Zimmermann, Johannes, Busch, Hauke, Hoyer, Bimba F., Kaleta, Christoph, Heyckendorf, Jan, Rybniker, Jan, Schultze, Joachim L., Rosenstiel, Philip, Banovich, Nicholas E., Desai, Tushar, Eickelberg, Oliver, Haniffa, Muzlifa, Horvath, Peter, Kropski, Jonathan A., Lafyatis, Robert, Meyer, Kerstin, Nawijn, Martijn C., Nikolic, Marko, Ordovas Montanes, Jose, Pe’er, Dana, Tata, Purushothama Rao, Rawlins, Emma, Regev, Aviv, Reyfman, Paul, Samakovlis, Christos, Schultze, Joachim, Shalek, Alex, Shepherd, Douglas, Spence, Jason, Theis, Fabian, van den Berge, Maarten, von Papen, Michael, Whitsett, Jeffrey, Angelov, Angel, Bals, Robert, Bonifacio, Ezio, Colme-Tatche, Maria, Diefenbach, Andreas, Dilthey, Alexander, Fischer, Nicole, Gagneur, Julien, Goesmann, Alexander, Kallies, René, Kehr, Birte, Keller, Andreas, Kim-Hellmuth, Sarah, Korbel, Jan O., Kurth, Ingo, Landthaler, Markus, Li, Yang, Ludwig, Kerstin, Makarewicz, Oliwia, Nöthen, Markus, Nürnberg, Peter, Ohler, Uwe, Overmann, Jörg, Peter, Silke, Pfeffer, Klaus, Poetsch, Anna R., Rajewsky, Niklaus, Ralser, Markus, Saliba, Antoine-Emmanuel, Schulte, Eva-Christina, Sczyrba, Alexander, Stegle, Oliver, Stoye, Jens, von Kleist, Max, Walker, Andreas

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Allergic inflammatory memory in human respiratory epithelial progenitor cells von Ordovas-Montanes, Jose, Dwyer, Daniel F., Nyquist, Sarah K., Buchheit, Kathleen M., Vukovic, Marko, Deb, Chaarushena, Wadsworth, Marc H., Hughes, Travis K., Kazer, Samuel W., Yoshimoto, Eri, Cahill, Katherine N., Bhattacharyya, Neil, Katz, Howard R., Berger, Bonnie, Laidlaw, Tanya M., Boyce, Joshua A., Barrett, Nora A., Shalek, Alex K.

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Single-Cell Analysis of the Liver Epithelium Reveals Dynamic Heterogeneity and an Essential Role for YAP in Homeostasis and Regeneration von Pepe-Mooney, Brian J., Dill, Michael T., Alemany, Anna, Ordovas-Montanes, Jose, Matsushita, Yuki, Rao, Anuradha, Sen, Anushna, Miyazaki, Makoto, Anakk, Sayeepriyadarshini, Dawson, Paul A., Ono, Noriaki, Shalek, Alex K., van Oudenaarden, Alexander, Camargo, Fernando D.

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Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19 von Ziegler, Carly G.K., Miao, Vincent N., Owings, Anna H., Navia, Andrew W., Tang, Ying, Bromley, Joshua D., Lotfy, Peter, Sloan, Meredith, Laird, Hannah, Williams, Haley B., George, Micayla, Drake, Riley S., Christian, Taylor, Parker, Adam, Sindel, Campbell B., Burger, Molly W., Pride, Yilianys, Hasan, Mohammad, Abraham, George E., Senitko, Michal, Robinson, Tanya O., Shalek, Alex K., Glover, Sarah C., Horwitz, Bruce H., Ordovas-Montanes, Jose

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The Regulation of Immunological Processes by Peripheral Neurons in Homeostasis and Disease von Ordovas-Montanes, Jose, Rakoff-Nahoum, Seth, Huang, Siyi, Riol-Blanco, Lorena, Barreiro, Olga, von Andrian, Ulrich H

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Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies von Hughes, Travis K., Wadsworth, Marc H., Gierahn, Todd M., Do, Tran, Weiss, David, Andrade, Priscila R., Ma, Feiyang, de Andrade Silva, Bruno J., Shao, Shuai, Tsoi, Lam C., Ordovas-Montanes, Jose, Gudjonsson, Johann E., Modlin, Robert L., Love, J. Christopher, Shalek, Alex K.

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Integrated single-cell analysis of multicellular immune dynamics during hyperacute HIV-1 infection von Kazer, Samuel W., Aicher, Toby P., Muema, Daniel M., Carroll, Shaina L., Ordovas-Montanes, Jose, Miao, Vincent N., Tu, Ang A., Ziegler, Carly G. K., Nyquist, Sarah K., Wong, Emily B., Ismail, Nasreen, Dong, Mary, Moodley, Amber, Berger, Bonnie, Love, J. Christopher, Dong, Krista L., Leslie, Alasdair, Ndhlovu, Zaza M., Ndung’u, Thumbi, Walker, Bruce D., Shalek, Alex K.

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Cyclin D3 drives inertial cell cycling in dark zone germinal center B cells von Pae, Juhee, Ersching, Jonatan, Castro, Tiago B R, Schips, Marta, Mesin, Luka, Allon, Samuel J, Ordovas-Montanes, Jose, Mlynarczyk, Coraline, Melnick, Ari, Efeyan, Alejo, Shalek, Alex K, Meyer-Hermann, Michael, Victora, Gabriel D

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Induced pluripotent stem cells: A novel frontier in the study of human primary immunodeficiencies von Pessach, Itai M., MD, PhD, Ordovas-Montanes, Jose, BA, Zhang, Shen-Ying, MD, Casanova, Jean-Laurent, MD, PhD, Giliani, Silvia, PhD, Gennery, Andrew R., MD, Al-Herz, Waleed, MD, Manos, Philip D., PhD, Schlaeger, Thorsten M., PhD, Park, In-Hyun, PhD, Rucci, Francesca, PhD, Agarwal, Suneet, MD, PhD, Mostoslavsky, Gustavo, MD, PhD, Daley, George Q., MD, Notarangelo, Luigi D., MD

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Impaired intrinsic immunity to HSV-1 in human iPSC-derived TLR3-deficient CNS cells von Lafaille, Fabien G., Pessach, Itai M., Zhang, Shen-Ying, Ciancanelli, Michael J., Herman, Melina, Abhyankar, Avinash, Ying, Shui-Wang, Keros, Sotirios, Goldstein, Peter A., Mostoslavsky, Gustavo, Ordovas-Montanes, Jose, Jouanguy, Emmanuelle, Plancoulaine, Sabine, Tu, Edmund, Elkabetz, Yechiel, Al-Muhsen, Saleh, Tardieu, Marc, Schlaeger, Thorsten M., Daley, George Q., Abel, Laurent, Casanova, Jean-Laurent, Studer, Lorenz, Notarangelo, Luigi D.

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Navigating COVID-19: Starting a lab during the pandemic von Ordovás-Montañés, José, Gerlach, Carmen, Moraes-Vieira, Pedro, Vento-Tormo, Roser, Zhang, Conggang, Jurado, Kellie Ann

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Cellular and inter-cellular rewiring of the human colon during ulcerative colitis von Smillie, Christopher S., Biton, Moshe, Ordovas-Montañes, José, Sullivan, Keri M., Burgin, Grace, Graham, Daniel B., Herbst, Rebecca H., Rogel, Noga, Slyper, Michal, Waldman, Julia, Sud, Malika, Andrews, Elizabeth, Velonias, Gabriella, Haber, Adam L., Jagadeesh, Karthik, Vickovic, Sanja, Yao, Junmei, Stevens, Christine, Dionne, Danielle, Nguyen, Lan T., Villani, Alexandra-Chloé, Hofree, Matan, Creasey, Elizabeth A., Huang, Hailiang, Rozenblatt-Rosen, Orit, Garber, John J., Khalili, Hamed, Desch, A. Nicole, Daly, Mark J., Ananthakrishnan, Ashwin N., Shalek, Alex K., Xavier, Ramnik J., Regev, Aviv

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A Reproducibility-Based Computational Framework Identifies an Inducible, Enhanced Antiviral State in Dendritic Cells from HIV-1 Elite Controllers von Martin-Gayo, Enrique, Cole, Michael B, Kolb, Kellie E, Ouyang, Zhengyu, Cronin, Jacqueline, Kazer, Samuel W, Ordovas-Montanes, Jose, Lichterfeld, Mathias, Walker, Bruce D, Yosef, Nir, Shalek, Alex K, Yu, Xu G

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Role of Respiratory Epithelial Cells in Allergic Diseases von Jakwerth, Constanze A, Ordovas-Montanes, Jose, Blank, Simon, Schmidt-Weber, Carsten B, Zissler, Ulrich M

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Screening for modulators of the cellular composition of gut epithelia via organoid models of intestinal stem cell differentiation von Mead, Benjamin E., Hattori, Kazuki, Levy, Lauren, Imada, Shinya, Goto, Norihiro, Vukovic, Marko, Sze, Daphne, Kummerlowe, Conner, Matute, Juan D., Duan, Jinzhi, Langer, Robert, Blumberg, Richard S., Ordovas-Montanes, Jose, Yilmaz, Ömer H., Karp, Jeffrey M., Shalek, Alex K.

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