The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community von Jain, Miten, Olsen, Hugh E, Paten, Benedict, Akeson, Mark

Volltext

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing von Smith, Andrew M, Jain, Miten, Mulroney, Logan, Garalde, Daniel R, Akeson, Mark

Volltext

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads von Shafin, Kishwar, Pesout, Trevor, Chang, Pi-Chuan, Nattestad, Maria, Kolesnikov, Alexey, Goel, Sidharth, Baid, Gunjan, Kolmogorov, Mikhail, Eizenga, Jordan M., Miga, Karen H., Carnevali, Paolo, Jain, Miten, Carroll, Andrew, Paten, Benedict

Volltext

Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells von Byrne, Ashley, Beaudin, Anna E., Olsen, Hugh E., Jain, Miten, Cole, Charles, Palmer, Theron, DuBois, Rebecca M., Forsberg, E. Camilla, Akeson, Mark, Vollmers, Christopher

Volltext

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes von Shafin, Kishwar, Pesout, Trevor, Lorig-Roach, Ryan, Haukness, Marina, Olsen, Hugh E., Bosworth, Colleen, Armstrong, Joel, Tigyi, Kristof, Maurer, Nicholas, Koren, Sergey, Sedlazeck, Fritz J., Marschall, Tobias, Mayes, Simon, Costa, Vania, Zook, Justin M., Liu, Kelvin J., Kilburn, Duncan, Sorensen, Melanie, Munson, Katy M., Vollger, Mitchell R., Monlong, Jean, Garrison, Erik, Eichler, Evan E., Salama, Sofie, Haussler, David, Green, Richard E., Akeson, Mark, Phillippy, Adam, Miga, Karen H., Carnevali, Paolo, Jain, Miten, Paten, Benedict

Volltext

Linear assembly of a human centromere on the Y chromosome von Jain, Miten, Olsen, Hugh E, Turner, Daniel J, Stoddart, David, Bulazel, Kira V, Paten, Benedict, Haussler, David, Willard, Huntington F, Akeson, Mark, Miga, Karen H

Volltext

Epigenetic patterns in a complete human genome von Gershman, Ariel, Sauria, Michael E G, Guitart, Xavi, Vollger, Mitchell R, Hook, Paul W, Hoyt, Savannah J, Jain, Miten, Shumate, Alaina, Razaghi, Roham, Koren, Sergey, Altemose, Nicolas, Caldas, Gina V, Logsdon, Glennis A, Rhie, Arang, Eichler, Evan E, Schatz, Michael C, O'Neill, Rachel J, Phillippy, Adam M, Miga, Karen H, Timp, Winston

Volltext

MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome von Tyson, John R, O'Neil, Nigel J, Jain, Miten, Olsen, Hugh E, Hieter, Philip, Snutch, Terrance P

Volltext

Centromere reference models for human chromosomes X and Y satellite arrays von Miga, Karen H, Newton, Yulia, Jain, Miten, Altemose, Nicolas, Willard, Huntington F, Kent, W James

Volltext

CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma von Liu, S John, Malatesta, Martina, Lien, Brian V, Saha, Parna, Thombare, Shivani S, Hong, Sung Jun, Pedraza, Leslie, Koontz, Mark, Seo, Kyounghee, Horlbeck, Max A, He, Daniel, Birk, Harjus S, Jain, Miten, Olsen, Hugh E, Akeson, Mark, Weissman, Jonathan S, Monje, Michelle, Gupta, Nalin, Raleigh, David R, Ullian, Erik M, Lim, Daniel A

Volltext

Inflammation drives alternative first exon usage to regulate immune genes including a novel iron-regulated isoform of Aim2 von Robinson, Elektra K, Jagannatha, Pratibha, Covarrubias, Sergio, Cattle, Matthew, Smaliy, Valeriya, Safavi, Rojin, Shapleigh, Barbara, Abu-Shumays, Robin, Jain, Miten, Cloonan, Suzanne M, Akeson, Mark, Brooks, Angela N, Carpenter, Susan

Volltext

A Survey of Rare Epigenetic Variation in 23,116 Human Genomes Identifies Disease-Relevant Epivariations and CGG Expansions von Garg, Paras, Jadhav, Bharati, Rodriguez, Oscar L., Patel, Nihir, Martin-Trujillo, Alejandro, Jain, Miten, Metsu, Sofie, Olsen, Hugh, Paten, Benedict, Ritz, Beate, Kooy, R. Frank, Gecz, Jozef, Sharp, Andrew J.

Volltext

MinION Analysis and Reference Consortium: Phase 1 data release and analysis von Ip, Camilla L C, Loose, Matthew, Tyson, John R, de Cesare, Mariateresa, Brown, Bonnie L, Jain, Miten, Leggett, Richard M, Eccles, David A, Zalunin, Vadim, Urban, John M, Piazza, Paolo, Bowden, Rory J, Paten, Benedict, Mwaigwisya, Solomon, Batty, Elizabeth M, Simpson, Jared T, Snutch, Terrance P, Birney, Ewan, Buck, David, Goodwin, Sara, Jansen, Hans J, O'Grady, Justin, Olsen, Hugh E

Volltext

miRNA-independent function of long noncoding pri-miRNA loci von He, Daniel, Wu, David, Muller, Soren, Wang, Lin, Saha, Parna, Ahanger, Sajad Hamid, Liu, Siyuan John, Cui, Miao, Hong, Sung Jun, Jain, Miten, Olson, Hugh E., Akeson, Mark, Costello, Joseph F., Diaz, Aaron, Lim, Daniel A.

Volltext

Nanopore signal deviations from pseudouridine modifications in RNA are sequence-specific: quantification requires dedicated synthetic controls von Makhamreh, Amr, Tavakoli, Sepideh, Fallahi, Ali, Kang, Xinqi, Gamper, Howard, Nabizadehmashhadtoroghi, Mohammad, Jain, Miten, Hou, Ya-Ming, Rouhanifard, Sara H., Wanunu, Meni

Volltext

Local read haplotagging enables accurate long-read small variant calling von Kolesnikov, Alexey, Cook, Daniel, Nattestad, Maria, Brambrink, Lucas, McNulty, Brandy, Gorzynski, John, Goenka, Sneha, Ashley, Euan A., Jain, Miten, Miga, Karen H., Paten, Benedict, Chang, Pi-Chuan, Carroll, Andrew, Shafin, Kishwar

Volltext

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry [version 1; peer review: 1 approved, 2 approved with reservations] von Jain, Miten, Tyson, John R, Loose, Matthew, Ip, Camilla L.C, Eccles, David A, O'Grady, Justin, Malla, Sunir, Leggett, Richard M, Wallerman, Ola, Jansen, Hans J, Zalunin, Vadim, Birney, Ewan, Brown, Bonnie L, Snutch, Terrance P, Olsen, Hugh E

Volltext

Real-Time Culture-Independent Microbial Profiling Onboard the International Space Station using Nanopore Sequencing von Stahl-Rommel, Sarah, Jain, Miten, Nguyen, Hang N., Arnold, Richard G., Aunon-Chancellor, Serena M., Sharp, G. Marie, Castro, Christian, John, Kristen K., Juul, Sissel, Turner, Daniel, Stoddart, David, Paten, Benedict, Akeson, Mark, Burton, Aaron S., Castro-Wallace, Sarah L.

Volltext

Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing von Burton, Aaron S, Stahl, Sarah E, John, Kristen K, Jain, Miten, Juul, Sissel, Turner, Daniel J, Harrington, Eoghan D, Stoddart, David, Paten, Benedict, Akeson, Mark, Castro-Wallace, Sarah L

Volltext

Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community von Jain, Miten, Olsen, Hugh E, Paten, Benedict, Akeson, Mark

Volltext