A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics von Oftadeh, Omid, Salvy, Pierre, Masid, Maria, Curvat, Maxime, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Volltext

Rational strain design with minimal phenotype perturbation von Narayanan, Bharath, Weilandt, Daniel, Masid, Maria, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Volltext

Production of biofuels and biochemicals: in need of an ORACLE von Miskovic, Ljubisa, Hatzimanikatis, Vassily

Volltext

Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints von Chakrabarti, Anirikh, Miskovic, Ljubisa, Soh, Keng Cher, Hatzimanikatis, Vassily

Volltext

Rites of passage: requirements and standards for building kinetic models of metabolic phenotypes von Miskovic, Ljubisa, Tokic, Milenko, Fengos, Georgios, Hatzimanikatis, Vassily

Volltext

Uncertainty reduction in biochemical kinetic models: Enforcing desired model properties von Miskovic, Ljubisa, Béal, Jonas, Moret, Michael, Hatzimanikatis, Vassily

Volltext

Identification of metabolic engineering targets for the enhancement of 1,4-butanediol production in recombinant E. coli using large-scale kinetic models von Andreozzi, Stefano, Chakrabarti, Anirikh, Soh, Keng Cher, Burgard, Anthony, Yang, Tae Hoon, Van Dien, Stephen, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Volltext

From network models to network responses: integration of thermodynamic and kinetic properties of yeast genome-scale metabolic networks von Soh, Keng Cher, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Volltext

Modeling of uncertainties in biochemical reactions von Mišković, Ljubiša, Hatzimanikatis, Vassily

Volltext

Iterative minimization of H 2 control performance criteria von Bazanella, Alexandre S., Gevers, Michel, Mišković, Ljubiša, Anderson, Brian D.O.

Volltext

Identification and the Information Matrix: How to Get Just Sufficiently Rich? von Gevers, M., Bazanella, A.S., Bombois, X., Miskovic, L.

Volltext

Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies von Tokic, Milenko, Hatzimanikatis, Vassily, Miskovic, Ljubisa

Volltext

Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites von Hadadi, Noushin, MohammadiPeyhani, Homa, Miskovic, Ljubisa, Seijo, Marianne, Hatzimanikatis, Vassily

Volltext

iSCHRUNK – In Silico Approach to Characterization and Reduction of Uncertainty in the Kinetic Models of Genome-scale Metabolic Networks von Andreozzi, Stefano, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Volltext

Control Theory Concepts for Modeling Uncertainty in Enzyme Kinetics of Biochemical Networks von Miskovic, Ljubisa, Tokic, Milenko, Savoglidis, Georgios, Hatzimanikatis, Vassily

Volltext

Constraint-based metabolic control analysis for rational strain engineering von Tsouka, Sophia, Ataman, Meric, Hameri, Tuure, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Volltext

Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations von Hameri, Tuure, Fengos, Georgios, Ataman, Meric, Miskovic, Ljubisa, Hatzimanikatis, Vassily

Volltext

Reconstructing Kinetic Models for Dynamical Studies of Metabolism using Generative Adversarial Networks von Choudhury, Subham, Moret, Michael, Salvy, Pierre, Weilandt, Daniel, Hatzimanikatis, Vassily, Miskovic, Ljubisa

Volltext

Generative machine learning produces kinetic models that accurately characterize intracellular metabolic states von Choudhury, Subham, Narayanan, Bharath, Moret, Michael, Hatzimanikatis, Vassily, Miskovic, Ljubisa

Volltext

A design-build-test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive c... von Miskovic, Ljubisa, Alff-Tuomala, Susanne, Soh, Keng Cher, Barth, Dorothee, Salusjärvi, Laura, Pitkänen, Juha-Pekka, Ruohonen, Laura, Penttilä, Merja, Hatzimanikatis, Vassily

Volltext