Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function von Mirny, Leonid A., Shakhnovich, Eugene I.

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Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus von Shakhnovich, Eugene I, Li, Lewyn, Mirny, Leonid A

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How to Derive a Protein Folding Potential? A New Approach to an Old Problem von Mirny, Leonid A., Shakhnovich, Eugene I.

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How Evolution Makes Proteins Fold Quickly von Mirny, Leonid A., Abkevich, Victor I., Shakhnovich, Eugene I.

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Structural analysis of conserved base pairs in protein–DNA complexes von Mirny, Leonid A., Gelfand, Mikhail S.

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Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells von Kind, Jop, Pagie, Ludo, de Vries, Sandra S., Nahidiazar, Leila, Dey, Siddharth S., Bienko, Magda, Zhan, Ye, Lajoie, Bryan, de Graaf, Carolyn A., Amendola, Mario, Fudenberg, Geoffrey, Imakaev, Maxim, Mirny, Leonid A., Jalink, Kees, Dekker, Job, van Oudenaarden, Alexander, van Steensel, Bas

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Different gene regulation strategies revealed by analysis of binding motifs von Wunderlich, Zeba, Mirny, Leonid A

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Protein Complexes and Functional Modules in Molecular Networks von Spirin, Victor, Mirny, Leonid A.

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Kinetics of Protein-DNA Interaction: Facilitated Target Location in Sequence-Dependent Potential von Slutsky, Michael, Mirny, Leonid A.

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Protein knot server: detection of knots in protein structures von Kolesov, Grigory, Virnau, Peter, Kardar, Mehran, Mirny, Leonid A

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Protein structure prediction by threading. Why it works and why it does not von Mirny, L A, Shakhnovich, E I

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CoC: a database of universally conserved residues in protein folds von Donald, Jason E., Hubner, Isaac A., Rotemberg, Veronica M., Shakhnovich, Eugene I., Mirny, Leonid A.

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Zfx Controls the Self-Renewal of Embryonic and Hematopoietic Stem Cells von Galan-Caridad, Jose M., Harel, Sivan, Arenzana, Teresita L., Hou, Z. Esther, Doetsch, Fiona K., Mirny, Leonid A., Reizis, Boris

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Statistical Significance of Protein Structure Prediction by Threading von Mirny, L A, Finkelstein, A V, Shakhnovich, E I

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Using Orthologous and Paralogous Proteins to Identify Specificity-determining Residues in Bacterial Transcription Factors von Mirny, Leonid A., Gelfand, Mikhail S.

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Universality and diversity of the protein folding scenarios:a comprehensive analysis with the aid of a lattice model von Mirny, Leonid A, Abkevich, Victor, Shakhnovich, Eugene I

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Amino Acids Determining Enzyme-Substrate Specificity in Prokaryotic and Eukaryotic Protein Kinases von Li, Lewyn, Shakhnovich, Eugene I., Mirny, Leonid A.

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Comparison of two optimization methods to derive energy parameters for protein folding: Perceptron and Z score von Vendruscolo, Michele, Mirny, Leonid A., Shakhnovich, Eugene I., Domany, Eytan

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Diffusion in correlated random potentials, with applications to DNA von Slutsky, Michael, Kardar, Mehran, Mirny, Leonid A

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3-D Computer Modelling of Chromatin Fibres for Radiation Damage Simulation von Yu. Chepel, V., Khvostunov, I.K., Mirny, L.A., Talyzina, T.A., Andreev, S.G.

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