An integrative computational model for intestinal tissue renewal von Van Leeuwen, I. M. M., Mirams, G. R., Walter, A., Fletcher, A., Murray, P., Osborne, J., Varma, S., Young, S. J., Cooper, J., Doyle, B., Pitt-Francis, J., Momtahan, L., Pathmanathan, P., Whiteley, J. P., Chapman, S. J., Gavaghan, D. J., Jensen, O. E., King, J. R., Maini, P. K., Waters, S. L., Byrne, H. M.

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Defining vitamin D status using multi-metabolite mathematical modelling: A pregnancy perspective von Beentjes, C.H.L., Taylor-King, J.P., Bayani, A., Davis, C.N., Dunster, J.L., Jabbari, S., Mirams, G.R., Jenkinson, C., Kilby, M.D., Hewison, M., Tamblyn, J.A.

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A hybrid approach to multi-scale modelling of cancer von Osborne, J. M., Walter, A., Kershaw, S. K., Mirams, G. R., Fletcher, A. G., Pathmanathan, P., Gavaghan, D., Jensen, O. E., Maini, P. K., Byrne, H. M.

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Distinguishing possible mechanisms for auxin-mediated developmental control in Arabidopsis: Models with two Aux/IAA and ARF proteins, and two target gene-sets von Bridge, L.J., Mirams, G.R., Kieffer, M.L., King, J.R., Kepinski, S.

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Chaste: A test-driven approach to software development for biological modelling von Pitt-Francis, Joe, Pathmanathan, Pras, Bernabeu, Miguel O., Bordas, Rafel, Cooper, Jonathan, Fletcher, Alexander G., Mirams, Gary R., Murray, Philip, Osborne, James M., Walter, Alex, Chapman, S. Jon, Garny, Alan, van Leeuwen, Ingeborg M.M., Maini, Philip K., Rodríguez, Blanca, Waters, Sarah L., Whiteley, Jonathan P., Byrne, Helen M., Gavaghan, David J.

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Sinusoidal voltage protocols for rapid characterisation of ion channel kinetics von Beattie, Kylie A., Hill, Adam P., Bardenet, Rémi, Cui, Yi, Vandenberg, Jamie I., Gavaghan, David J., Boer, Teun P., Mirams, Gary R.

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Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing von Quinn, T.A., Granite, S., Allessie, M.A., Antzelevitch, C., Bollensdorff, C., Bub, G., Burton, R.A.B., Cerbai, E., Chen, P.S., Delmar, M., DiFrancesco, D., Earm, Y.E., Efimov, I.R., Egger, M., Entcheva, E., Fink, M., Fischmeister, R., Franz, M.R., Garny, A., Giles, W.R., Hannes, T., Harding, S.E., Hunter, P.J., Iribe, G., Jalife, J., Johnson, C.R., Kass, R.S., Kodama, I., Koren, G., Lord, P., Markhasin, V.S., Matsuoka, S., McCulloch, A.D., Mirams, G.R., Morley, G.E., Nattel, S., Noble, D., Olesen, S.P., Panfilov, A.V., Trayanova, N.A., Ravens, U., Richard, S., Rosenbaum, D.S., Rudy, Y., Sachs, F., Sachse, F.B., Saint, D.A., Schotten, U., Solovyova, O., Taggart, P., Tung, L., Varró, A., Volders, P.G., Wang, K., Weiss, J.N., Wettwer, E., White, E., Wilders, R., Winslow, R.L., Kohl, P.

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Considering discrepancy when calibrating a mechanistic electrophysiology model von Lei, CL, Ghosh, S, Whittaker, DG, Aboelkassem, Y, Beattie, KA, Cantwell, CD, Delhaas, T, Houston, C, Novaes, GM, Panfilov, AV, Pathmanathan, P, Riabiz, M, Dos Santos, RW, Walmsley, J, Worden, K, Mirams, GR, Wilkinson, RD

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6 Can you teach an old dog new tricks? The anti-malarial hydroxychloroquine shows promise in cardiac rate control through actions at the sino-atrial node von Capel, RA, Mirams, GR, Beattie, KA, Paterson, DJ, Terrar, DA, Burton, RAB

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High resolution structural evidence suggests the Sarcoplasmic Reticulum forms microdomains with Acidic Stores (lysosomes) in the heart von Aston, D, Capel, RA, Ford, KL, Christian, HC, Mirams, GR, Rog-Zielinska, EA, Kohl, P, Galione, A, Burton, RAB, Terrar, DA

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Application of cardiac electrophysiology simulations to pro-arrhythmic safety testing von Mirams, GR, Davies, MR, Cui, Y, Kohl, P, Noble, D

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Ten Simple Rules for Effective Computational Research von Osborne, JM, Bernabeu, MO, Bruna, M, Calderhead, B, Cooper, J, Dalchau, N, Dunn, S-J, Fletcher, AG, Freeman, R, Groen, D, Knapp, B, McInerny, GJ, Mirams, GR, Pitt-Francis, J, Sengupta, B, Wright, DW, Yates, CA, Gavaghan, DJ, Emmott, S, Deane, C

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Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing von Quinn, TA, Granite, S, Allessie, MA, Antzelevitch, C, Bollensdorff, C, Bub, G, Burton, RAB, Cerbai, E, Chen, PS, Delmar, M, DiFrancesco, D, Earm, YE, Efimov, IR, Egger, M, Entcheva, E, Fink, M, Fischmeister, R, Franz, MR, Garny, A, Giles, WR, Hannes, T, Harding, SE, Hunter, PJ, Iribe, G, Jalife, J, Johnson, CR, Kass, RS, Kodama, I, Koren, G, Lord, P, Markhasin, VS, Matsuoka, S, McCulloch, AD, Mirams, GR, Morley, GE, Nattel, S, Noble, D, Olesen, SP, Panfilov, AV, Trayanova, NA, Ravens, U, Richard, S, Rosenbaum, DS, Rudy, Y, Sachs, F, Sachse, FB, Saint, DA, Schotten, U, Solovyova, O, Taggart, P, Tung, L, Varro, A, Volders, PG, Wang, K, Weiss, JN, Wettwer, E, White, E, Wilders, R, Winslow, RL, Kohl, P

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chaste codegen: automatic CellML to C++ code generation with fixes for singularities and automatically generated Jacobians [version 1; peer review: 2 approved, 1 approved with rese... von Hendrix, M, Clerx, M, Tamuri, AU, Keating, SM, Johnstone, RH, Cooper, J, Mirams, GR

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Models of the cardiac L-type calcium current: a quantitative comparison von Agrawal, A, Wang, K, Polonchuk, L, Cooper, J, Mirams, GR, Gavaghan, DJ, Clerx, M

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Sinusoidal voltage protocols for rapid characterisation of ion channel kinetics von Beattie, KA, Hill, AP, Bardenet, R, Cui, Y, Vandenberg, JI, Gavaghan, DJ, de Boer, TP, Mirams, GR

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Chaste: an open source C++ library for computational physiology and biology von Mirams, Gary R, Arthurs, Christopher J, Bernabeu, Miguel O, Bordas, Rafel, Cooper, Jonathan, Corrias, Alberto, Davit, Yohan, Dunn, Sara-Jane, Fletcher, Alexander G, Harvey, Daniel G, Marsh, Megan E, Osborne, James M, Pathmanathan, Pras, Pitt-Francis, Joe, Southern, James, Zemzemi, Nejib, Gavaghan, David J

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Calibration of ionic and cellular cardiac electrophysiology models von Whittaker, Dominic G., Clerx, Michael, Lei, Chon Lok, Christini, David J., Mirams, Gary R.

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Assessment of an In Silico Mechanistic Model for Proarrhythmia Risk Prediction Under the CiPA Initiative von Li, Zhihua, Ridder, Bradley J., Han, Xiaomei, Wu, Wendy W., Sheng, Jiansong, Tran, Phu N., Wu, Min, Randolph, Aaron, Johnstone, Ross H., Mirams, Gary R., Kuryshev, Yuri, Kramer, James, Wu, Caiyun, Crumb, William J., Strauss, David G.

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The impact of uncertainty in hERG binding mechanism on in silico predictions of drug‐induced proarrhythmic risk von Lei, Chon Lok, Whittaker, Dominic G., Mirams, Gary R.

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