A linear noise approximation for stochastic epidemic models fit to partially observed incidence counts von Fintzi, Jonathan, Wakefield, Jon, Minin, Vladimir N.

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Species Delimitation using Genome-Wide SNP Data von Leaché, Adam D., Fujita, Matthew K., Minin, Vladimir N., Bouckaert, Remco R.

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Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts von Magee, Andrew F, Höhna, Sebastian, Vasylyeva, Tetyana I, Leaché, Adam D, Minin, Vladimir N

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A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis von Dhar, Amrit, Ralph, Duncan K, Minin, Vladimir N, Matsen, 4th, Frederick A

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19 Dubious Ways to Compute the Marginal Likelihood of a Phylogenetic Tree Topology von Fourment, Mathieu, Magee, Andrew F., Whidden, Chris, Bilge, Arman, Matsen, Frederick A., Minin, Vladimir N.

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Estimating effective population size changes from preferentially sampled genetic sequences von Karcher, Michael D, Carvalho, Luiz Max, Suchard, Marc A, Dudas, Gytis, Minin, Vladimir N

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Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics von Minin, Vladimir N., Bloomquist, Erik W., Suchard, Marc A.

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Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference von Karcher, Michael D, Palacios, Julia A, Bedford, Trevor, Suchard, Marc A, Minin, Vladimir N

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Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae) von Linkem, Charles W., Minin, Vladimir N., Leaché, Adam D.

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Predicting B cell receptor substitution profiles using public repertoire data von Dhar, Amrit, Davidsen, Kristian, Matsen, 4th, Frederick A, Minin, Vladimir N

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Fast, accurate and simulation-free stochastic mapping von Minin, Vladimir N, Suchard, Marc A

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Marginal Likelihoods in Phylogenetics: A Review of Methods and Applications von Oaks, Jamie R., Cobb, Kerry A., Minin, Vladimir N., Leaché, Adam D.

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Locally Adaptive Smoothing with Markov Random Fields and Shrinkage Priors von Faulkner, James R, Minin, Vladimir N

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phylodyn: an R package for phylodynamic simulation and inference von Karcher, Michael D., Palacios, Julia A., Lan, Shiwei, Minin, Vladimir N.

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Horseshoe‐based Bayesian nonparametric estimation of effective population size trajectories von Faulkner, James R., Magee, Andrew F., Shapiro, Beth, Minin, Vladimir N.

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Predictors of Test Positivity, Mortality, and Seropositivity during the Early Coronavirus Disease Epidemic, Orange County, California, USA von Parker, Daniel M, Bruckner, Tim, Vieira, Veronica M, Medina, Catalina, Minin, Vladimir N, Felgner, Philip L, Dratch, Alissa, Zahn, Matthew, Bartell, Scott M, Boden-Albala, Bernadette

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Using Genotype Abundance to Improve Phylogenetic Inference von DeWitt, 3rd, William S, Mesin, Luka, Victora, Gabriel D, Minin, Vladimir N, Matsen, 4th, Frederick A

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Counting labeled transitions in continuous-time Markov models of evolution von Minin, Vladimir N., Suchard, Marc A.

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Fitting stochastic epidemic models to gene genealogies using linear noise approximation von Tang, Mingwei, Dudas, Gytis, Bedford, Trevor, Minin, Vladimir N

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Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid von Pankey, M Sabrina, Minin, Vladimir N, Imholte, Greg C, Suchard, Marc A, Oakley, Todd H

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