The Tree of Life: Metaphor, Model, and Heuristic Device von Mindell, David P.

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Approaching a state shift in Earth’s biosphere von Barnosky, Anthony D., Hadly, Elizabeth A., Bascompte, Jordi, Berlow, Eric L., Brown, James H., Fortelius, Mikael, Getz, Wayne M., Harte, John, Hastings, Alan, Marquet, Pablo A., Martinez, Neo D., Mooers, Arne, Roopnarine, Peter, Vermeij, Geerat, Williams, John W., Gillespie, Rosemary, Kitzes, Justin, Marshall, Charles, Matzke, Nicholas, Mindell, David P., Revilla, Eloy, Smith, Adam B.

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Rapid diversification of falcons (Aves: Falconidae) due to expansion of open habitats in the Late Miocene von Fuchs, Jérôme, Johnson, Jeff A., Mindell, David P.

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Apply our best model inferences now von Mindell, David P.

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Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages von Brown, Joseph W, Rest, Joshua S, García-Moreno, Jaime, Sorenson, Michael D, Mindell, David P

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Evolutionary biology for the 21st century von Losos, Jonathan B, Arnold, Stevan J, Bejerano, Gill, Brodie, 3rd, E D, Hibbett, David, Hoekstra, Hopi E, Mindell, David P, Monteiro, Antónia, Moritz, Craig, Orr, H Allen, Petrov, Dmitri A, Renner, Susanne S, Ricklefs, Robert E, Soltis, Pamela S, Turner, Thomas L

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Whole-genome analyses resolve early branches in the tree of life of modern birds von Jarvis, Erich D., Aberer, Andre J., Li, Bo, Houde, Peter, Li, Cai, Ho, Simon Y. W., Faircloth, Brant C., Nabholz, Benoit, Howard, Jason T., Suh, Alexander, Weber, Claudia C., da Fonseca, Rute R., Li, Jianwen, Zhang, Fang, Li, Hui, Zhou, Long, Narula, Nitish, Liu, Liang, Ganapathy, Ganesh, Bayzid, Md. Shamsuzzoha, Zavidovych, Volodymyr, Subramanian, Sankar, Gabaldón, Toni, Capella-Gutiérrez, Salvador, Huerta-Cepas, Jaime, Rekepalli, Bhanu, Munch, Kasper, Schierup, Mikkel, Lindow, Bent, Warren, Wesley C., Ray, David, Green, Richard E., Bruford, Michael W., Dixon, Andrew, Li, Shengbin, Li, Ning, Huang, Yinhua, Derryberry, Elizabeth P., Bertelsen, Mads Frost, Sheldon, Frederick H., Brumfield, Robb T., Mello, Claudio V., Lovell, Peter V., Wirthlin, Morgan, Schneider, Maria Paula Cruz, Prosdocimi, Francisco, Samaniego, José Alfredo, Velazquez, Amhed Missael Vargas, Alfaro-Núñez, Alonzo, Campos, Paula F., Petersen, Bent, Sicheritz-Ponten, Thomas, Pas, An, Bailey, Tom, Scofield, Paul, Bunce, Michael, Lambert, David M., Zhou, Qi, Perelman, Polina, Driskell, Amy C., Shapiro, Beth, Xiong, Zijun, Zeng, Yongli, Liu, Shiping, Li, Zhenyu, Liu, Binghang, Wu, Kui, Xiao, Jin, Yinqi, Xiong, Zhang, Yong, Yang, Huanming, Wang, Jian, Smeds, Linnea, Rheindt, Frank E., Braun, Michael, Fjeldsa, Jon, Orlando, Ludovic, Barker, F. Keith, Jønsson, Knud Andreas, Johnson, Warren, Koepfli, Klaus-Peter, Haussler, David, Ryder, Oliver A., Rahbek, Carsten, Willerslev, Eske, Graves, Gary R., Glenn, Travis C., McCormack, John, Burt, Dave, Ellegren, Hans, Alström, Per, Edwards, Scott V., Stamatakis, Alexandros, Mindell, David P., Cracraft, Joel, Braun, Edward L., Warnow, Tandy, Jun, Wang, Gilbert, M. Thomas P., Zhang, Guojie

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Genome-wide diversity in the California condor tracks its prehistoric abundance and decline von Robinson, Jacqueline A., Bowie, Rauri C.K., Dudchenko, Olga, Aiden, Erez Lieberman, Hendrickson, Sher L., Steiner, Cynthia C., Ryder, Oliver A., Mindell, David P., Wall, Jeffrey D.

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Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles von Cho, Yun Sung, Jun, Je Hoon, Kim, Jung A, Kim, Hak-Min, Chung, Oksung, Kang, Seung-Gu, Park, Jin-Young, Kim, Hwa-Jung, Kim, Sunghyun, Kim, Hee-Jong, Jang, Jin-Ho, Na, Ki-Jeong, Kim, Jeongho, Park, Seung Gu, Lee, Hwang-Yeol, Manica, Andrea, Mindell, David P, Fuchs, Jérôme, Edwards, Jeremy S, Weber, Jessica A, Witt, Christopher C, Yeo, Joo-Hong, Kim, Soonok, Bhak, Jong

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Phylogeny of eagles, Old World vultures, and other Accipitridae based on nuclear and mitochondrial DNA von Lerner, Heather R.L., Mindell, David P.

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Multi-locus phylogenetic inference among New World Vultures (Aves: Cathartidae) von Johnson, Jeff A., Brown, Joseph W., Fuchs, Jérôme, Mindell, David P.

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Response to Bakker et al von Robinson, Jacqueline A, Bowie, Rauri C K, Dudchenko, Olga, Aiden, Erez Lieberman, Hendrickson, Sher L, Steiner, Cynthia C, Ryder, Oliver A, Mindell, David P, Wall, Jeffrey D

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Primers for a PCR-Based Approach to Mitochondrial Genome Sequencing in Birds and Other Vertebrates von Sorenson, Michael D., Ast, Jennifer C., Dimcheff, Derek E., Yuri, Tamaki, Mindell, David P.

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Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes von Hanna, Zachary R, Henderson, James B, Wall, Jeffrey D, Emerling, Christopher A, Fuchs, Jérôme, Runckel, Charles, Mindell, David P, Bowie, Rauri C K, DeRisi, Joseph L, Dumbacher, John P

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Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds" von Cracraft, Joel, Houde, Peter, Ho, Simon Y W, Mindell, David P, Fjeldså, Jon, Lindow, Bent, Edwards, Scott V, Rahbek, Carsten, Mirarab, Siavash, Warnow, Tandy, Gilbert, M Thomas P, Zhang, Guojie, Braun, Edward L, Jarvis, Erich D

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It's not too late for the harpy eagle (Harpia harpyja): high levels of genetic diversity and differentiation can fuel conservation programs von Lerner, Heather R L, Johnson, Jeff A, Lindsay, Alec R, Kiff, Lloyd F, Mindell, David P

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Molecular systematics of the caracaras and allies (Falconidae: Polyborinae) inferred from mitochondrial and nuclear sequence data von FUCHS, JÉRÔME, JOHNSON, JEFF A., MINDELL, DAVID P.

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Molecular phylogenetic analysis of Fringillidae, “New World nine-primaried oscines” (Aves: Passeriformes) von Yuri, Tamaki, Mindell, David P

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Molecular Evidence of HIV-1 Transmission in a Criminal Case von Metzker, Michael L., Mindell, David P., Liu, Xiao-Mei, Ptak, Roger G., Gibbs, Richard A., Hillis, David M.

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rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny von Dimmic, Matthew W, Rest, Joshua S, Mindell, David P, Goldstein, Richard A

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