Be-dataHIVE: a base editing database von Schneider, Lucas, Minary, Peter

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On the use of the adiabatic molecular dynamics technique in the calculation of free energy profiles von Rosso, Lula, Mináry, Peter, Zhu, Zhongwei, Tuckerman, Mark E.

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crisprSQL: a novel database platform for CRISPR/Cas off-target cleavage assays von Störtz, Florian, Minary, Peter

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Training-free atomistic prediction of nucleosome occupancy von Minary, Peter, Levitt, Michael

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Comprehensive computational analysis of epigenetic descriptors affecting CRISPR-Cas9 off-target activity von Mak, Jeffrey K, Störtz, Florian, Minary, Peter

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A new reciprocal space based treatment of long range interactions on surfaces von Mináry, Peter, Tuckerman, Mark E., Pihakari, Katianna A., Martyna, Glenn J.

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Ab initio Molecular Dynamics: Concepts, Recent Developments, and Future Trends von Iftimie, Radu, Minary, Peter, Tuckerman, Mark E., Berne, Bruce J.

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piCRISPR: Physically informed deep learning models for CRISPR/Cas9 off-target cleavage prediction von Störtz, Florian, Mak, Jeffrey K., Minary, Peter

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Multiscale natural moves refine macromolecules using single-particle electron microscopy projection images von Zhang, Junjie, Minary, Peter, Levitt, Michael

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Long range interactions on wires: a reciprocal space based formalism von Mináry, Peter, Morrone, Joseph A, Yarne, Dawn A, Tuckerman, Mark E, Martyna, Glenn J

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Modeling and design by hierarchical natural moves von Sim, Adelene Y. L, Levitt, Michael, Minary, Peter

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Training-free measures based on algorithmic probability identify high nucleosome occupancy in DNA sequences von Zenil, Hector, Minary, Peter

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Learning to quantify uncertainty in off-target activity for CRISPR guide RNAs von Özden, Furkan, Minary, Peter

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Algorithms and novel applications based on the isokinetic ensemble. I. Biophysical and path integral molecular dynamics von Minary, Peter, Martyna, Glenn J., Tuckerman, Mark E.

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Hierarchical natural move Monte Carlo refines flexible RNA structures into cryo-EM densities von Chang, Jeng-Yih, Cui, Zhicheng, Yang, Kailu, Huang, Jianhua, Minary, Peter, Zhang, Junjie

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HLA-DM Stabilizes the Empty MHCII Binding Groove: A Model Using Customized Natural Move Monte Carlo von Demharter, Samuel, Knapp, Bernhard, Deane, Charlotte, Minary, Peter

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The Evolution of Nucleic Acid–Based Diagnosis Methods from the (pre-)CRISPR to CRISPR era and the Associated Machine/Deep Learning Approaches in Relevant RNA Design von Chakraborty, Shruti Sarika, Ray Dutta, Jayati, Ganesan, Ramakrishnan, Minary, Peter

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Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands von Moraga, Ignacio, Wernig, Gerlinde, Wilmes, Stephan, Gryshkova, Vitalina, Richter, Christian P., Hong, Wan-Jen, Sinha, Rahul, Guo, Feng, Fabionar, Hyna, Wehrman, Tom S., Krutzik, Peter, Demharter, Samuel, Plo, Isabelle, Weissman, Irving L., Minary, Peter, Majeti, Ravindra, Constantinescu, Stefan N., Piehler, Jacob, Garcia, K. Christopher

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Modeling nucleic acids von Sim, Adelene YL, Minary, Peter, Levitt, Michael

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Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo von Knapp, Bernhard, Demharter, Samuel, Deane, Charlotte M, Minary, Peter

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